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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3600 and PfGW456L13_3601 are separated by 39 nucleotides
PfGW456L13_3601 and PfGW456L13_3602 are separated by 31 nucleotides
PfGW456L13_3602 and PfGW456L13_3603 are separated by 1 nucleotides
PfGW456L13_3603 and PfGW456L13_3604 overlap by 8 nucleotides
PfGW456L13_3600 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 4,052,062 to 4,053,177
_3600
PfGW456L13_3601 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 4,053,217 to 4,054,359
_3601
PfGW456L13_3602 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 4,054,391 to 4,055,308
_3602
PfGW456L13_3603 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 4,055,310 to 4,056,137
_3603
PfGW456L13_3604 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,056,130 to 4,057,602
_3604
Group
Condition
PfGW456L13
_3600
PfGW456L13
_3601
PfGW456L13
_3602
PfGW456L13
_3603
PfGW456L13
_3604
carbon source
octanoate (C)
-0.1
-0.1
-0.2
-0.7
-0.7
carbon source
L-Glutamine (C)
-0.3
+0.0
+0.1
-0.9
-0.6
carbon source
D-Glucose (C)
-0.2
-0.4
-0.4
-1.0
+0.4
carbon source
D-Lactate (C)
-0.3
-0.1
+0.2
-0.4
-0.8
carbon source
D-Serine (C)
-0.2
-0.4
+0.0
-0.4
-0.3
stress
Aluminum chloride 5 mM
-0.0
+0.1
-0.1
-0.5
-0.5
carbon source
D-Fructose (C)
-0.6
-0.4
+0.1
-0.1
-0.1
carbon source
L-Arabinose (C)
-0.1
-0.6
+0.2
-0.2
-0.4
carbon source
Trisodium citrate (C)
-0.2
-0.3
-0.3
+0.0
-0.3
lb
LB
+0.2
-0.1
-0.2
-0.5
-0.4
stress
nitrate 200 mM
+0.2
+0.0
-0.4
-0.6
-0.2
carbon source
D-Fructose (C)
-0.6
-0.2
+0.7
-1.0
+0.3
carbon source
D,L-Lactate (C)
-0.3
-0.4
+0.2
-0.0
-0.4
carbon source
L-Tryptophan (C)
-0.3
-0.6
+0.2
+0.1
-0.2
carbon source
L-Lactate (C)
-0.5
+0.0
-0.2
-0.3
+0.1
carbon source
D-Galactose (C)
-0.2
-0.6
-0.0
-0.4
+0.4
carbon source
L-Phenylalanine (C)
-0.3
-0.0
+0.2
-0.4
-0.3
nitrogen source
L-Glutamic (N)
-0.1
-0.2
-0.3
-0.2
+0.2
carbon source
L-Histidine (C)
-0.2
-0.6
+0.3
-0.2
+0.2
carbon source
Glycerol (C)
+0.2
-0.8
+0.0
+0.1
+0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
-0.5
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.0
-0.0
-0.1
+0.4
-0.6
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
+0.1
+0.3
+0.1
-0.7
carbon source
a-Ketoglutaric (C)
+0.1
-0.3
+0.3
-0.4
+0.4
carbon source
L-Valine (C)
-0.1
-0.0
+0.0
+0.6
-0.6
carbon source
D-Gluconic Acid (C)
-0.1
-0.5
+0.1
+0.3
+0.3
control
LB control
-0.2
-0.1
+0.3
-0.3
+0.4
carbon source
Tween 20 (C)
-0.1
-0.4
+0.2
+0.2
+0.3
carbon source
casaminos (C)
-0.1
-0.2
+0.4
+0.5
+0.1
carbon source
Putrescine (C)
+0.1
-0.4
+0.7
+0.8
-0.5
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