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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3567 and PfGW456L13_3568 are separated by 48 nucleotides
PfGW456L13_3568 and PfGW456L13_3569 are separated by 72 nucleotides
PfGW456L13_3569 and PfGW456L13_3570 are separated by 520 nucleotides
PfGW456L13_3570 and PfGW456L13_3571 are separated by 125 nucleotides
PfGW456L13_3567 - hypothetical protein, at 4,019,176 to 4,019,370
_3567
PfGW456L13_3568 - DNA topoisomerase III (EC 5.99.1.2), at 4,019,419 to 4,021,365
_3568
PfGW456L13_3569 - acetyltransferase, GNAT family, at 4,021,438 to 4,021,941
_3569
PfGW456L13_3570 - FIG00960995: hypothetical protein, at 4,022,462 to 4,022,794
_3570
PfGW456L13_3571 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 4,022,920 to 4,024,422
_3571
Group
Condition
PfGW456L13
_3567
PfGW456L13
_3568
PfGW456L13
_3569
PfGW456L13
_3570
PfGW456L13
_3571
carbon source
L-Malic (C)
+0.2
-0.7
-0.0
-0.5
-0.2
carbon source
Tween 20 (C)
+0.3
+0.1
-0.1
-1.5
-0.0
carbon source
L-Tryptophan (C)
-0.2
-0.3
+0.1
-0.4
-0.2
carbon source
succinate (C)
+0.4
-0.3
-0.2
-0.6
-0.1
stress
Vancomycin 0.125 mg/ml
-0.5
-0.2
-0.2
+0.0
+0.3
carbon source
L-Valine (C)
+0.2
+0.2
-0.2
-0.3
-0.4
carbon source
D-Fructose (C)
+0.2
+0.2
-0.1
-0.1
-0.5
carbon source
L-Arabinose (C)
+0.2
+0.2
-0.1
+0.1
-0.7
carbon source
D-Lactate (C)
-0.1
+0.3
-0.1
+0.3
-0.6
carbon source
D-Lactate (C)
+0.0
+0.4
-0.3
-0.0
-0.5
stress
Aluminum chloride 5 mM
+0.4
+0.1
+0.1
-0.7
-0.2
carbon source
L-Tryptophan (C)
+0.4
+0.2
-0.2
+0.0
-0.7
nitrogen source
nitrate (N)
-0.0
+0.5
-0.3
-0.4
-0.0
stress
A22 0.04 mg/ml
-0.3
+0.1
-0.3
+0.2
+0.1
carbon source
L-Alanine (C)
+0.5
-0.0
-0.1
-0.2
-0.2
carbon source
L-Phenylalanine (C)
+0.4
-0.3
-0.2
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.3
+0.2
-0.1
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.3
-0.4
-0.2
+0.4
+0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.6
-0.4
-0.1
+0.0
+0.1
carbon source
Tween 20 (C)
+0.5
+0.1
-0.2
+0.1
-0.3
carbon source
D,L-Lactate (C)
+0.5
+0.3
+0.0
+0.1
-0.5
carbon source
Trisodium citrate (C)
+1.0
-0.1
-0.2
-0.1
-0.2
carbon source
D-Glucosamine Hydrochloride (C)
+0.5
+0.2
-0.0
+0.1
-0.3
carbon source
D-Alanine (C)
+0.3
-0.0
-0.2
+0.3
+0.2
carbon source
L-Histidine (C)
+0.6
-0.2
-0.3
+0.1
+0.3
carbon source
a-Ketoglutaric (C)
+0.4
+0.9
-0.2
+0.1
-0.1
carbon source
L-Glutamine (C)
+0.4
+0.2
-0.1
+0.3
+0.1
nitrogen source
D-Alanine (N)
+0.3
+0.5
-0.1
+0.2
+0.1
carbon source
octanoate (C)
+0.3
+0.4
-0.1
+0.5
-0.0
stress
Lomefloxacin 0.0004 mM
+0.4
-0.6
+0.2
+1.3
+0.5
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PfGW456L13_3569
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