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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3556 and PfGW456L13_3557 are separated by 240 nucleotides
PfGW456L13_3557 and PfGW456L13_3558 are separated by 170 nucleotides
PfGW456L13_3558 and PfGW456L13_3559 are separated by 175 nucleotides
PfGW456L13_3559 and PfGW456L13_3560 are separated by 132 nucleotides
PfGW456L13_3556 - hypothetical protein, at 4,005,374 to 4,005,661
_3556
PfGW456L13_3557 - Nitrate/nitrite response regulator protein, at 4,005,902 to 4,006,531
_3557
PfGW456L13_3558 - Glutathione-regulated potassium-efflux system protein KefB, at 4,006,702 to 4,008,510
_3558
PfGW456L13_3559 - DNA alkylation repair enzyme, at 4,008,686 to 4,009,783
_3559
PfGW456L13_3560 - Transcriptional regulator, LysR family, at 4,009,916 to 4,010,818
_3560
Group
Condition
PfGW456L13
_3556
PfGW456L13
_3557
PfGW456L13
_3558
PfGW456L13
_3559
PfGW456L13
_3560
carbon source
a-Ketoglutaric (C)
+0.0
-0.2
-1.9
-0.4
+0.1
carbon source
a-Ketoglutaric (C)
-1.8
-0.5
+0.6
-0.0
-0.6
carbon source
D-Mannose (C)
-0.4
-0.8
-0.9
-0.0
+0.2
carbon source
D-Gluconic Acid (C)
-1.5
-0.6
+0.4
-0.0
+0.3
carbon source
D-Galactose (C)
-1.1
-0.1
-0.5
+0.0
+0.3
nitrogen source
Gly-Glu (N)
+0.1
-0.6
-0.8
+0.0
-0.1
nitrogen source
Uridine (N)
-0.3
-0.6
-0.4
-0.2
+0.1
nitrogen source
L-Lysine (N)
-0.4
-0.3
-0.5
+0.2
-0.1
carbon source
L-Arabinose (C)
-1.1
+0.6
-0.5
-0.2
+0.1
carbon source
D-Gluconic Acid (C)
-0.3
-0.4
-0.9
-0.0
+0.6
carbon source
D-Fructose (C)
-0.6
+0.1
-0.5
+0.1
-0.1
carbon source
D-Lactate (C)
+0.3
-0.6
-0.6
+0.0
-0.1
carbon source
Trisodium citrate (C)
-0.9
+0.5
-0.9
+0.2
+0.3
nitrogen source
L-Leucine (N)
+0.3
-0.6
-0.4
+0.2
-0.2
carbon source
L-Valine (C)
+0.5
+0.1
-1.1
-0.1
+0.0
stress
Lomefloxacin 0.0004 mM
-1.4
+0.3
-0.1
+0.2
+0.4
control
LB control
-1.0
+0.5
+0.1
-0.1
+0.0
carbon source
L-Histidine (C)
-0.3
+0.2
-0.7
+0.0
+0.4
carbon source
D-Glucose (C)
-0.6
-0.1
-0.4
+0.2
+0.4
carbon source
L-Tryptophan (C)
+0.1
+0.4
-1.0
+0.0
+0.1
carbon source
D-Alanine (C)
-0.1
-0.5
-0.7
-0.1
+1.2
carbon source
D-Serine (C)
+0.3
+0.2
-0.6
-0.2
+0.3
carbon source
L-Valine (C)
+0.3
-0.5
+0.6
+0.0
-0.3
carbon source
Glycerol (C)
-0.9
+0.7
+0.3
+0.2
+0.2
lb
LB
+0.6
+0.5
-0.4
-0.1
+0.2
carbon source
succinate (C)
+1.1
-0.2
-0.3
+0.2
+0.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.6
-0.2
+0.6
-0.0
-0.1
carbon source
D-Alanine (C)
+0.0
-0.4
+0.5
+0.0
+1.2
carbon source
D-Fructose (C)
+1.6
-0.3
-0.0
-0.0
+0.3
carbon source
octanoate (C)
+1.7
+1.0
-0.8
-0.4
+0.2
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