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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3553 and PfGW456L13_3554 are separated by 522 nucleotides
PfGW456L13_3554 and PfGW456L13_3555 are separated by 12 nucleotides
PfGW456L13_3555 and PfGW456L13_3556 are separated by 248 nucleotides
PfGW456L13_3556 and PfGW456L13_3557 are separated by 240 nucleotides
PfGW456L13_3553 - hypothetical protein, at 3,998,505 to 3,998,630
_3553
PfGW456L13_3554 - T1SS secreted agglutinin RTX, at 3,999,153 to 4,004,633
_3554
PfGW456L13_3555 - hypothetical protein, at 4,004,646 to 4,005,125
_3555
PfGW456L13_3556 - hypothetical protein, at 4,005,374 to 4,005,661
_3556
PfGW456L13_3557 - Nitrate/nitrite response regulator protein, at 4,005,902 to 4,006,531
_3557
Group
Condition
PfGW456L13
_3553
PfGW456L13
_3554
PfGW456L13
_3555
PfGW456L13
_3556
PfGW456L13
_3557
carbon source
D-Gluconic Acid (C)
N.D.
-0.2
-0.3
-1.5
-0.6
carbon source
D-Galactose (C)
N.D.
-0.3
-0.2
-1.1
-0.1
carbon source
D-Mannose (C)
N.D.
-0.0
-0.3
-0.4
-0.8
carbon source
a-Ketoglutaric (C)
N.D.
+0.2
+0.7
-1.8
-0.5
stress
Lomefloxacin 0.0004 mM
N.D.
+0.1
-0.3
-1.4
+0.3
carbon source
D-Glucose (C)
N.D.
+0.0
-0.7
-0.6
-0.1
nitrogen source
L-Histidine (N)
N.D.
-0.0
+0.0
-0.7
-0.5
nitrogen source
Uridine (N)
N.D.
-0.1
-0.3
-0.3
-0.6
stress
Benzethonium chloride 0.0125 mM
N.D.
+0.1
-0.4
-0.2
-0.6
carbon source
D-Gluconic Acid (C)
N.D.
+0.0
-0.4
-0.3
-0.4
stress
Chloride 400 mM
N.D.
-0.0
+0.0
-0.9
+0.1
nitrogen source
L-Lysine (N)
N.D.
-0.2
+0.2
-0.4
-0.3
nitrogen source
L-Leucine (N)
N.D.
+0.0
-0.3
+0.3
-0.6
carbon source
L-Arabinose (C)
N.D.
-0.0
-0.2
-1.1
+0.6
carbon source
D-Lactate (C)
N.D.
-0.2
-0.1
+0.3
-0.6
carbon source
Trisodium citrate (C)
N.D.
+0.0
-0.2
-0.9
+0.5
control
LB control
N.D.
-0.0
+0.0
-1.0
+0.5
carbon source
Glycerol (C)
N.D.
-0.1
-0.2
-0.9
+0.7
carbon source
casaminos (C)
N.D.
+0.0
+0.4
-0.1
-0.7
carbon source
L-Tryptophan (C)
N.D.
+0.0
+0.4
-0.7
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
-0.1
+0.5
+0.0
-0.6
carbon source
Putrescine (C)
N.D.
-0.2
+0.2
+0.5
-0.7
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.1
+0.1
+0.3
-0.6
nitrogen source
L-Asparagine (N)
N.D.
-0.0
-0.3
+0.6
-0.3
control
LB control
N.D.
-0.0
-0.2
-0.3
+0.6
carbon source
L-Arabinose (C)
N.D.
+0.1
+0.4
+0.4
-0.3
carbon source
succinate (C)
N.D.
-0.0
+0.2
+1.1
-0.2
lb
LB
N.D.
+0.0
+0.0
+0.6
+0.5
carbon source
D-Fructose (C)
N.D.
+0.0
+0.2
+1.6
-0.3
carbon source
octanoate (C)
N.D.
+0.4
+0.4
+1.7
+1.0
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