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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_3547 and PfGW456L13_3548 are separated by 13 nucleotides
PfGW456L13_3548 and PfGW456L13_3549 are separated by 260 nucleotides
PfGW456L13_3549 and PfGW456L13_3550 are separated by 3 nucleotides
PfGW456L13_3550 and PfGW456L13_3551 are separated by 173 nucleotides
PfGW456L13_3547 - Cobalt-zinc-cadmium resistance protein CzcD, at 3,990,369 to 3,991,301
_3547
PfGW456L13_3548 - FIG074102: hypothetical protein, at 3,991,315 to 3,991,590
_3548
PfGW456L13_3549 - pyridoxal phosphate-dependent deaminase, putative, at 3,991,851 to 3,992,882
_3549
PfGW456L13_3550 - peptidyl-prolyl cis-trans isomerase, FkbP-type, at 3,992,886 to 3,993,224
_3550
PfGW456L13_3551 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,993,398 to 3,994,471
_3551
Group
Condition
PfGW456L13
_3547
PfGW456L13
_3548
PfGW456L13
_3549
PfGW456L13
_3550
PfGW456L13
_3551
carbon source
Trisodium citrate (C)
-6.1
N.D.
+0.1
-0.9
+0.2
stress
Cobalt chloride 0.16 mM
-3.8
N.D.
+0.0
+0.1
-0.4
carbon source
L-Lactate (C)
-0.7
N.D.
-0.0
-1.2
-0.4
carbon source
a-Ketoglutaric (C)
-0.6
N.D.
-0.6
+0.0
-0.7
carbon source
octanoate (C)
+0.2
N.D.
-0.2
-1.3
-0.4
carbon source
D-Galactose (C)
-0.9
N.D.
+0.4
-0.7
-0.3
carbon source
Glycerol (C)
+0.2
N.D.
-0.0
-1.4
-0.2
carbon source
D-Glucose (C)
+0.1
N.D.
-0.1
-1.0
-0.4
carbon source
Tween 20 (C)
-0.1
N.D.
-0.1
-0.6
-0.4
carbon source
a-Ketoglutaric (C)
-0.3
N.D.
+0.7
-1.2
-0.4
carbon source
L-Arabinose (C)
-0.2
N.D.
-0.1
-0.8
+0.0
carbon source
L-Tryptophan (C)
-0.2
N.D.
+0.1
-0.8
-0.2
stress
nitrate 200 mM
-0.2
N.D.
-0.3
-0.5
-0.2
nitrogen source
Glycine (N)
-0.1
N.D.
-0.1
-0.4
-0.5
nitrogen source
Putrescine (N)
-0.3
N.D.
-0.3
-0.4
-0.0
carbon source
D-Lactate (C)
-0.9
N.D.
-0.1
-0.1
+0.1
carbon source
L-Histidine (C)
+0.2
N.D.
-0.0
-0.4
-0.7
carbon source
D-Serine (C)
+0.0
N.D.
+0.2
-1.0
-0.2
carbon source
Putrescine (C)
-0.7
N.D.
+0.1
-0.3
+0.3
carbon source
D-Fructose (C)
+0.5
N.D.
+0.1
-1.1
-0.2
carbon source
D-Fructose (C)
+0.4
N.D.
+0.2
-0.9
-0.3
carbon source
L-Malic (C)
-0.4
N.D.
+0.3
-0.7
+0.3
carbon source
L-Tryptophan (C)
-0.5
N.D.
+0.4
-0.2
-0.1
carbon source
D-Alanine (C)
+0.1
N.D.
-0.1
-0.6
+0.4
stress
Aluminum chloride 5 mM
-0.3
N.D.
-0.2
+0.5
+0.0
lb
LB
+0.5
N.D.
-0.2
+0.2
-0.4
carbon source
L-Malic (C)
-0.2
N.D.
-0.1
+0.5
+0.4
stress
Lomefloxacin 0.0004 mM
+0.6
N.D.
-0.2
+0.8
-0.6
stress
Dimethyl Sulfoxide 7.5 vol%
+0.4
N.D.
+0.3
+0.4
+0.0
carbon source
D-Gluconic Acid (C)
+0.1
N.D.
+0.4
+0.1
+0.4
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