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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3468 and PfGW456L13_3469 overlap by 8 nucleotides
PfGW456L13_3469 and PfGW456L13_3470 overlap by 13 nucleotides
PfGW456L13_3470 and PfGW456L13_3471 are separated by 157 nucleotides
PfGW456L13_3471 and PfGW456L13_3472 are separated by 183 nucleotides
PfGW456L13_3468 - Multidrug resistance protein A, at 3,894,055 to 3,895,161
_3468
PfGW456L13_3469 - Inner membrane component of tripartite multidrug resistance system, at 3,895,154 to 3,896,680
_3469
PfGW456L13_3470 - Methyl-accepting chemotaxis protein, at 3,896,668 to 3,898,320
_3470
PfGW456L13_3471 - Transcriptional regulator, IclR family, at 3,898,478 to 3,900,085
_3471
PfGW456L13_3472 - Bll0377 protein, at 3,900,269 to 3,901,081
_3472
Group
Condition
PfGW456L13
_3468
PfGW456L13
_3469
PfGW456L13
_3470
PfGW456L13
_3471
PfGW456L13
_3472
carbon source
D-Gluconic Acid (C)
-0.3
-0.5
-0.7
-0.1
-5.6
carbon source
Glycerol (C)
-0.0
+0.2
-0.5
+0.0
-4.0
carbon source
D-Fructose (C)
+0.2
-0.3
-0.7
+0.1
-1.3
carbon source
succinate (C)
+0.0
-0.1
+0.4
-0.2
-1.9
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-0.1
-0.6
-0.4
-0.4
carbon source
octanoate (C)
-0.1
-0.8
-0.5
-0.4
+0.5
carbon source
Putrescine (C)
-0.5
-0.8
-0.2
+0.2
+0.1
carbon source
D-Lactate (C)
-0.0
-0.3
-0.4
-0.4
+0.1
control
LB control
-0.1
+0.0
-0.0
+0.0
-0.9
carbon source
D-Lactate (C)
+0.2
+0.0
-0.3
-0.4
-0.3
carbon source
Trisodium citrate (C)
+0.2
-0.4
-0.4
-0.4
+0.2
stress
nitrite 10 mM
-0.1
+0.1
-0.1
+0.1
-0.7
nitrogen source
Gly-Glu (N)
+0.1
+0.2
-0.5
+0.1
-0.6
stress
nitrate 200 mM
-0.1
-0.0
-0.2
+0.2
-0.5
carbon source
L-Tryptophan (C)
+0.1
+0.1
-0.0
+0.0
-0.8
nitrogen source
L-Tryptophan (N)
-0.1
+0.2
-0.2
+0.0
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.1
-0.3
+0.2
-0.3
nitrogen source
L-Valine (N)
+0.0
+0.3
-0.1
-0.2
-0.4
carbon source
D-Gluconic Acid (C)
+0.1
+0.3
+0.2
-0.2
-0.8
stress
Cephalothin 3 mg/ml
+0.3
-0.3
+0.1
-0.0
-0.4
nitrogen source
Putrescine (N)
-0.2
+0.3
+0.1
-0.2
-0.3
stress
D-Cycloserine 0.125 mg/ml
-0.2
+0.2
+0.4
-0.0
-0.5
control
LB control
+0.3
+0.2
-0.0
+0.1
-0.6
nitrogen source
L-Arginine (N)
-0.2
+0.3
-0.1
+0.2
-0.2
carbon source
Tween 20 (C)
+0.3
-0.2
-0.4
+0.1
+0.4
carbon source
L-Phenylalanine (C)
+0.2
+0.2
+0.2
-0.0
-0.4
carbon source
L-Valine (C)
+0.0
+0.2
-0.1
-0.2
+0.5
carbon source
L-Malic (C)
-0.1
+0.1
+0.2
-0.4
+0.5
carbon source
L-Valine (C)
+0.0
-0.0
-0.3
+0.1
+0.6
carbon source
L-Asparagine (C)
+0.2
-0.2
+0.1
-0.1
+0.5
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