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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_343 and PfGW456L13_344 are separated by 73 nucleotides
PfGW456L13_344 and PfGW456L13_345 overlap by 4 nucleotides
PfGW456L13_345 and PfGW456L13_346 are separated by 227 nucleotides
PfGW456L13_346 and PfGW456L13_347 overlap by 4 nucleotides
PfGW456L13_343 - hypothetical protein, at 405,433 to 405,591
_343
PfGW456L13_344 - FIG00956533: hypothetical protein, at 405,665 to 406,132
_344
PfGW456L13_345 - FIG00953806: hypothetical protein, at 406,129 to 406,749
_345
PfGW456L13_346 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 406,977 to 408,062
_346
PfGW456L13_347 - Nitrogen regulation protein NR(I), at 408,059 to 409,495
_347
Group
Condition
PfGW456L13
_343
PfGW456L13
_344
PfGW456L13
_345
PfGW456L13
_346
PfGW456L13
_347
nitrogen source
NAG (N)
-0.2
+0.0
+0.1
-3.5
-6.8
nitrogen source
Putrescine (N)
+0.0
-0.3
-0.1
-3.2
-5.9
nitrogen source
Uridine (N)
-0.0
-0.2
+0.1
-2.9
-5.9
nitrogen source
L-Serine (N)
+0.1
-0.3
+0.1
-2.5
-6.1
nitrogen source
L-Threonine (N)
-0.2
-0.0
+0.3
-3.7
-5.0
nitrogen source
Cytosine (N)
-0.0
-0.5
+0.0
-3.1
-4.8
nitrogen source
nitrate (N)
+0.1
-0.0
+0.1
-2.2
-6.3
nitrogen source
L-Valine (N)
-0.1
-0.2
+0.1
-2.1
-5.9
nitrogen source
D-Alanine (N)
-0.2
+0.1
-0.0
-2.3
-5.7
nitrogen source
Glycine (N)
-0.2
-0.2
-0.0
-2.1
-5.5
nitrogen source
L-Isoleucine (N)
+0.0
-0.4
+0.1
-1.8
-5.8
nitrogen source
L-Proline (N)
-0.1
+0.0
-0.0
-2.1
-5.6
nitrogen source
L-Alanine (N)
-0.1
-0.2
-0.0
-1.9
-5.4
nitrogen source
L-Leucine (N)
-0.0
-0.4
+0.0
-2.0
-4.9
nitrogen source
L-Tryptophan (N)
-0.1
-0.5
-0.0
-2.2
-4.3
nitrogen source
L-Glutamic (N)
-0.0
-0.4
-0.2
-2.4
-3.6
nitrogen source
L-Phenylalanine (N)
+0.1
-0.0
+0.1
-1.9
-4.5
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.0
+0.0
-2.1
-3.3
nitrogen source
L-Citrulline (N)
+0.1
-0.1
-0.1
-1.2
-3.6
nitrogen source
Gly-Glu (N)
-0.2
+0.0
+0.1
-1.1
-3.5
nitrogen source
D-Serine (N)
+0.6
+0.3
+0.4
-0.5
-5.5
nitrogen source
L-Aspartic Acid (N)
-0.0
-0.3
+0.2
-1.4
-2.2
nitrogen source
L-Lysine (N)
-0.1
-0.2
+0.1
-1.2
-2.1
carbon source
D-Glucose (C)
+0.0
-0.2
+0.0
-1.2
-1.0
nitrogen source
L-Histidine (N)
-0.2
-0.2
-0.1
-0.6
-1.2
nitrogen source
L-Asparagine (N)
-0.2
+0.0
-0.0
-0.4
-1.8
carbon source
a-Ketoglutaric (C)
-0.3
-0.4
-0.1
-1.3
-0.2
stress
Vancomycin 0.5 mg/ml
+0.1
-0.1
+0.1
-0.9
-1.1
carbon source
Tween 20 (C)
+0.2
+0.2
+0.2
-0.9
-1.6
carbon source
octanoate (C)
+0.2
-0.3
+0.5
+1.1
+0.2
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