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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3339 and PfGW456L13_3340 are separated by 65 nucleotides
PfGW456L13_3340 and PfGW456L13_3341 are separated by 99 nucleotides
PfGW456L13_3341 and PfGW456L13_3342 are separated by 198 nucleotides
PfGW456L13_3342 and PfGW456L13_3343 overlap by 4 nucleotides
PfGW456L13_3339 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 3,750,665 to 3,751,423
_3339
PfGW456L13_3340 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 3,751,489 to 3,752,256
_3340
PfGW456L13_3341 - Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-), at 3,752,356 to 3,753,786
_3341
PfGW456L13_3342 - Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1), at 3,753,985 to 3,755,817
_3342
PfGW456L13_3343 - ABC transporter, periplasmic substrate-binding protein, at 3,755,814 to 3,757,655
_3343
Group
Condition
PfGW456L13
_3339
PfGW456L13
_3340
PfGW456L13
_3341
PfGW456L13
_3342
PfGW456L13
_3343
stress
Vancomycin 0.5 mg/ml
+0.1
-0.2
-1.9
-0.4
-0.3
carbon source
D-Alanine (C)
-1.4
-0.2
-0.2
+0.0
+0.1
stress
Bacitracin 1 mg/ml
-0.1
-0.1
-1.0
-0.1
-0.3
stress
Vancomycin 0.25 mg/ml
-0.0
-0.2
-1.2
-0.2
+0.0
carbon source
Putrescine (C)
-0.9
-0.1
-0.1
+0.1
-0.6
carbon source
Trisodium citrate (C)
-1.6
-0.2
+0.4
+0.0
+0.0
nitrogen source
L-Isoleucine (N)
-1.3
-0.1
-0.1
-0.0
+0.2
carbon source
L-Lactate (C)
-0.9
-0.1
-0.3
-0.0
+0.2
stress
Vancomycin 0.125 mg/ml
+0.1
-0.1
-0.9
-0.1
+0.0
carbon source
L-Arabinose (C)
-0.6
-0.2
-0.3
-0.1
+0.1
stress
Dimethyl Sulfoxide 7.5 vol%
+0.2
-0.1
-0.9
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
+0.4
-0.0
-0.7
+0.0
-0.5
nitrogen source
L-Lysine (N)
-0.5
-0.3
+0.2
-0.1
-0.2
nitrogen source
Gly-DL-Asp (N)
-0.8
+0.1
+0.3
-0.0
-0.2
carbon source
L-Arabinose (C)
-1.1
-0.4
+0.5
-0.0
+0.3
carbon source
D-Fructose (C)
-1.2
+0.0
+0.1
+0.2
+0.2
nitrogen source
L-Phenylalanine (N)
-0.5
-0.1
-0.4
+0.1
+0.4
carbon source
succinate (C)
-0.7
-0.1
-0.3
+0.1
+0.4
carbon source
D-Mannose (C)
-0.6
-0.1
+0.1
+0.2
+0.2
carbon source
L-Malic (C)
-0.4
-0.2
-0.1
+0.1
+0.4
carbon source
D-Lactate (C)
+0.1
-0.2
-0.6
+0.2
+0.4
nitrogen source
D-Serine (N)
+1.0
-0.5
-0.7
+0.1
-0.0
carbon source
L-Tryptophan (C)
+0.5
-0.5
-0.2
+0.1
+0.1
carbon source
D-Glucose (C)
+0.3
-0.3
-0.5
+0.2
+0.3
carbon source
L-Histidine (C)
+0.9
-0.2
-0.7
+0.0
+0.1
carbon source
D-Gluconic Acid (C)
+0.6
-0.2
+0.1
+0.0
-0.3
nitrogen source
L-Arginine (N)
+0.9
-0.2
-0.2
+0.1
-0.1
carbon source
L-Histidine (C)
+0.8
-0.2
-0.3
+0.1
+0.1
stress
Lomefloxacin 0.0004 mM
-0.4
+0.8
+2.2
+0.5
+0.4
carbon source
octanoate (C)
+0.2
-0.4
+3.6
+1.4
+1.0
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