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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3324 and PfGW456L13_3325 are separated by 424 nucleotides
PfGW456L13_3325 and PfGW456L13_3326 are separated by 10 nucleotides
PfGW456L13_3326 and PfGW456L13_3327 overlap by 4 nucleotides
PfGW456L13_3327 and PfGW456L13_3328 are separated by 32 nucleotides
PfGW456L13_3324 - FIG00461010: hypothetical protein, at 3,735,675 to 3,736,007
_3324
PfGW456L13_3325 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 3,736,432 to 3,739,089
_3325
PfGW456L13_3326 - FIG00953934: hypothetical protein, at 3,739,100 to 3,739,930
_3326
PfGW456L13_3327 - FIG00954117: hypothetical protein, at 3,739,927 to 3,740,187
_3327
PfGW456L13_3328 - GlpG protein (membrane protein of glp regulon), at 3,740,220 to 3,741,089
_3328
Group
Condition
PfGW456L13
_3324
PfGW456L13
_3325
PfGW456L13
_3326
PfGW456L13
_3327
PfGW456L13
_3328
carbon source
L-Malic (C)
-0.5
-0.5
+0.2
-1.8
-0.2
carbon source
D-Galactose (C)
-0.6
-0.1
-0.3
-0.4
-0.6
carbon source
D-Glucose (C)
-0.1
+0.0
+0.6
-2.2
-0.4
carbon source
Trisodium citrate (C)
-0.5
+0.0
+0.4
-1.7
-0.2
carbon source
a-Ketoglutaric (C)
+0.1
-0.2
-0.4
-1.4
+0.1
carbon source
L-Glutamine (C)
-0.1
-0.4
+0.1
-1.4
+0.1
carbon source
a-Ketoglutaric (C)
-0.6
-0.3
-0.6
+0.4
-0.6
stress
Vancomycin 0.5 mg/ml
+0.2
+0.2
-0.5
-1.0
-0.5
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
+0.0
-0.7
-0.4
carbon source
L-Tryptophan (C)
+0.3
-0.3
+0.1
-0.4
-0.8
control
LB control
-0.3
+0.1
+0.0
-0.3
-0.7
control
LB control
+0.4
+0.0
-0.1
-1.0
-0.2
nitrogen source
Gly-Glu (N)
-0.3
+0.1
-0.1
-0.9
+0.3
carbon source
D-Gluconic Acid (C)
+0.3
-0.2
-0.2
-1.0
+0.1
nitrogen source
L-Glutamine (N)
+0.3
+0.0
-0.3
-0.9
-0.0
carbon source
L-Tryptophan (C)
-0.1
-0.5
+0.3
-0.2
-0.4
stress
Cephalothin 3 mg/ml
+0.2
-0.1
+0.1
-0.8
-0.2
carbon source
D-Galactose (C)
+0.4
+0.1
+0.1
+0.1
-1.2
carbon source
L-Arabinose (C)
+0.1
-0.2
+0.4
-0.5
-0.4
carbon source
Glycerol (C)
+0.5
+0.2
-0.1
-0.4
-0.8
carbon source
D-Lactate (C)
-0.2
-0.3
+0.6
-0.3
-0.1
carbon source
Putrescine (C)
-0.3
-0.6
+0.4
+0.3
-0.0
carbon source
L-Glutamine (C)
-0.1
+0.1
+0.6
+0.0
-0.7
carbon source
L-Alanine (C)
-0.2
-0.3
+0.6
+0.1
-0.4
carbon source
D-Mannose (C)
+0.2
-0.1
+0.4
+0.4
-0.6
carbon source
L-Histidine (C)
-0.1
+0.0
+0.2
+0.9
-0.3
carbon source
L-Alanine (C)
+0.3
-0.1
+0.7
+0.3
-0.3
stress
Lomefloxacin 0.0004 mM
-0.2
+0.6
+1.1
-0.3
-0.4
stress
Cobalt chloride 0.16 mM
+0.2
-0.0
+0.7
+0.3
-0.3
carbon source
octanoate (C)
-0.1
+1.1
+0.2
+1.9
-2.0
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