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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3277 and PfGW456L13_3278 are separated by 182 nucleotides
PfGW456L13_3278 and PfGW456L13_3279 overlap by 4 nucleotides
PfGW456L13_3279 and PfGW456L13_3280 are separated by 73 nucleotides
PfGW456L13_3280 and PfGW456L13_3281 are separated by 191 nucleotides
PfGW456L13_3277 - TPR domain protein in aerotolerance operon, at 3,680,334 to 3,681,914
_3277
PfGW456L13_3278 - BatD, at 3,682,097 to 3,683,338
_3278
PfGW456L13_3279 - FIG068086: hypothetical protein, at 3,683,335 to 3,684,360
_3279
PfGW456L13_3280 - Choline-sulfatase (EC 3.1.6.6), at 3,684,434 to 3,686,014
_3280
PfGW456L13_3281 - Spermidine synthase (EC 2.5.1.16), at 3,686,206 to 3,688,719
_3281
Group
Condition
PfGW456L13
_3277
PfGW456L13
_3278
PfGW456L13
_3279
PfGW456L13
_3280
PfGW456L13
_3281
carbon source
L-Lactate (C)
-0.3
-0.3
-0.3
+0.0
-0.2
stress
Aluminum chloride 5 mM
-0.5
-0.1
-0.2
+0.1
-0.2
carbon source
L-Arabinose (C)
+0.1
-0.1
+0.1
-0.3
-0.7
carbon source
D-Fructose (C)
-0.4
+0.1
-0.2
-0.2
+0.1
control
LB control
-0.1
-0.5
-0.1
-0.1
+0.1
carbon source
D-Galactose (C)
-0.4
+0.2
-0.0
-0.1
-0.3
carbon source
L-Glutamine (C)
+0.3
+0.2
-0.5
+0.1
-0.6
nitrogen source
Gly-DL-Asp (N)
-0.1
+0.2
-0.3
+0.2
-0.3
carbon source
Putrescine (C)
+0.2
+0.3
-0.5
+0.3
-0.4
carbon source
L-Malic (C)
-0.0
+0.3
-0.3
+0.2
-0.3
stress
Aluminum chloride 2.5 mM
-0.3
+0.0
+0.2
+0.2
-0.2
carbon source
D-Glucose (C)
-0.5
+0.1
+0.2
-0.1
+0.2
nitrogen source
L-Isoleucine (N)
+0.1
-0.1
+0.2
+0.1
-0.3
carbon source
D-Gluconic Acid (C)
+0.1
+0.2
-0.2
+0.3
-0.4
carbon source
D-Gluconic Acid (C)
+0.2
-0.3
+0.2
-0.1
+0.2
carbon source
octanoate (C)
+0.3
+0.4
-0.3
-0.2
-0.0
carbon source
Tween 20 (C)
-0.1
+0.1
+0.2
+0.2
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
+0.0
-0.1
+0.2
+0.3
stress
Dimethyl Sulfoxide 7.5 vol%
+0.0
+0.5
+0.1
-0.2
+0.0
carbon source
L-Malic (C)
+0.0
-0.2
+0.3
+0.4
-0.1
stress
Cephalothin 3 mg/ml
+0.2
+0.3
+0.2
-0.2
-0.0
stress
Fusidic 0.03 mg/ml
+0.1
+0.3
+0.0
-0.1
+0.3
stress
Bacitracin 0.5 mg/ml
+0.2
+0.3
+0.1
-0.2
+0.3
carbon source
D-Lactate (C)
-0.0
+0.4
+0.1
+0.2
-0.1
carbon source
D-Galactose (C)
+0.3
+0.2
+0.0
-0.0
+0.2
stress
A22 0.04 mg/ml
+0.1
+0.6
+0.1
-0.1
+0.0
carbon source
casaminos (C)
+0.1
+0.2
+0.3
+0.2
+0.1
stress
Vancomycin 0.125 mg/ml
+0.0
+0.4
+0.3
+0.2
+0.2
carbon source
D,L-Lactate (C)
+0.0
+0.4
+0.2
+0.1
+0.3
stress
Lomefloxacin 0.0004 mM
+0.3
+0.7
-0.1
-0.1
+0.5
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