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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3258 and PfGW456L13_3259 are separated by 252 nucleotides
PfGW456L13_3259 and PfGW456L13_3260 overlap by 46 nucleotides
PfGW456L13_3260 and PfGW456L13_3261 are separated by 12 nucleotides
PfGW456L13_3261 and PfGW456L13_3262 are separated by 150 nucleotides
PfGW456L13_3258 - hypothetical protein, at 3,657,403 to 3,657,636
_3258
PfGW456L13_3259 - 4Fe-4S ferredoxin, iron-sulfur binding, at 3,657,889 to 3,659,244
_3259
PfGW456L13_3260 - hypothetical protein, at 3,659,199 to 3,659,411
_3260
PfGW456L13_3261 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 3,659,424 to 3,660,833
_3261
PfGW456L13_3262 - Short-chain dehydrogenase/reductase SDR, at 3,660,984 to 3,661,730
_3262
Group
Condition
PfGW456L13
_3258
PfGW456L13
_3259
PfGW456L13
_3260
PfGW456L13
_3261
PfGW456L13
_3262
carbon source
Putrescine (C)
-0.4
-0.4
-3.0
+0.1
-0.2
carbon source
D-Galactose (C)
+0.1
+0.0
-2.5
-0.2
-0.1
carbon source
D-Fructose (C)
-0.4
+0.2
-2.2
-0.2
-0.1
stress
Lomefloxacin 0.0004 mM
-0.2
-0.4
-1.6
+0.4
-0.3
carbon source
D-Galactose (C)
-0.9
+0.1
-1.3
-0.2
+0.2
carbon source
D-Lactate (C)
-0.2
-0.0
-1.1
+0.0
-0.6
nitrogen source
L-Aspartic Acid (N)
-0.4
+0.4
-1.6
-0.0
+0.0
carbon source
D-Gluconic Acid (C)
+0.0
-0.1
-1.1
+0.1
-0.3
nitrogen source
L-Threonine (N)
-0.1
+0.1
-1.7
-0.0
+0.2
carbon source
L-Lactate (C)
-0.2
-0.3
-0.9
+0.2
+0.0
nitrogen source
D-Serine (N)
-0.5
+0.3
-1.0
+0.1
-0.0
nitrogen source
Ammonium chloride (N)
-0.4
+0.3
-1.2
+0.1
+0.1
nitrogen source
L-Lysine (N)
-0.5
+0.3
-1.0
-0.1
+0.1
carbon source
succinate (C)
-0.8
+0.2
-0.8
-0.2
+0.6
carbon source
L-Arabinose (C)
-0.7
+0.2
-0.4
-0.3
+0.2
carbon source
D-Fructose (C)
-0.4
+0.1
-0.7
+0.3
-0.2
nitrogen source
L-Citrulline (N)
-0.0
+0.2
-1.2
-0.0
+0.1
nitrogen source
L-Phenylalanine (N)
+0.2
+0.2
-1.2
-0.1
+0.1
carbon source
Trisodium citrate (C)
-0.3
+0.2
-1.0
-0.0
+0.3
nitrogen source
L-Histidine (N)
-0.3
+0.4
-1.3
-0.1
+0.4
carbon source
D-Mannose (C)
+0.3
+0.2
-1.6
+0.2
+0.2
nitrogen source
L-Alanine (N)
+0.2
+0.2
-1.0
+0.0
-0.2
nitrogen source
NAG (N)
-0.1
+0.2
-1.3
+0.2
+0.2
carbon source
octanoate (C)
-0.4
+0.3
-0.8
+0.3
+0.4
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.1
+0.2
-0.8
+0.2
+0.5
stress
Zinc 1 mM
-0.6
-0.0
+1.1
-0.1
-0.1
lb
LB
+0.4
-0.2
+0.6
+0.2
-0.2
stress
Paraquat dichloride 0.032 mg/ml
-0.3
+0.3
+0.7
-0.0
+0.3
carbon source
D-Glucose (C)
+0.5
-0.1
+1.0
-0.1
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.4
+0.8
-0.0
+0.3
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