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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3155 and PfGW456L13_3156 are separated by 114 nucleotides
PfGW456L13_3156 and PfGW456L13_3157 are separated by 215 nucleotides
PfGW456L13_3157 and PfGW456L13_3158 are separated by 817 nucleotides
PfGW456L13_3158 and PfGW456L13_3159 are separated by 290 nucleotides
PfGW456L13_3155 - L-Proline/Glycine betaine transporter ProP, at 3,532,403 to 3,533,692
_3155
PfGW456L13_3156 - DNA topology modulation protein, at 3,533,807 to 3,534,343
_3156
PfGW456L13_3157 - aerotaxis receptor, putative, at 3,534,559 to 3,536,124
_3157
PfGW456L13_3158 - FIG00957787: hypothetical protein, at 3,536,942 to 3,537,220
_3158
PfGW456L13_3159 - FIG00960959: hypothetical protein, at 3,537,511 to 3,538,152
_3159
Group
Condition
PfGW456L13
_3155
PfGW456L13
_3156
PfGW456L13
_3157
PfGW456L13
_3158
PfGW456L13
_3159
nitrogen source
Gly-DL-Asp (N)
+0.2
-0.2
+0.1
-0.4
-1.0
nitrogen source
Ammonium chloride (N)
-0.1
-0.5
+0.0
-0.4
-0.3
carbon source
L-Malic (C)
-0.2
-0.6
+0.0
-0.4
+0.1
control
LB
-0.1
-0.2
-0.1
-0.6
+0.2
carbon source
Glycerol (C)
+0.0
-0.3
+0.1
-0.0
-0.6
nitrogen source
L-Proline (N)
+0.1
-0.2
-0.1
-0.3
-0.4
carbon source
L-Malic (C)
+0.2
-0.0
-0.0
-0.5
-0.4
carbon source
L-Asparagine (C)
+0.0
+0.2
+0.0
-0.3
-0.5
carbon source
succinate (C)
-0.1
+0.2
+0.1
-0.6
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.1
-0.2
-0.5
+0.1
nitrogen source
Gly-Glu (N)
-0.0
+0.1
-0.0
-0.8
+0.2
stress
Cobalt chloride 0.16 mM
+0.0
-0.5
-0.3
+0.2
+0.2
lb
LB
-0.1
+0.2
-0.3
-0.4
+0.1
carbon source
Trisodium citrate (C)
-0.2
-0.2
-0.1
+0.4
-0.3
carbon source
L-Tryptophan (C)
+0.1
-0.2
-0.0
-0.5
+0.3
nitrogen source
L-Leucine (N)
+0.0
+0.2
+0.2
-0.5
-0.2
carbon source
D-Fructose (C)
-0.4
+0.4
+0.1
-0.2
-0.1
carbon source
L-Alanine (C)
+0.0
+0.3
+0.1
-0.6
+0.2
carbon source
octanoate (C)
+0.2
-0.2
-0.1
+0.5
-0.3
carbon source
Putrescine (C)
+0.0
-0.3
+0.2
-0.3
+0.4
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.2
+0.3
-0.1
-0.3
+0.1
carbon source
L-Arabinose (C)
-0.1
+0.3
-0.2
-0.1
+0.3
stress
Fusidic 0.03 mg/ml
+0.2
-0.3
+0.1
+0.6
-0.2
carbon source
L-Arabinose (C)
-0.2
+0.4
+0.3
+0.4
-0.3
carbon source
L-Glutamine (C)
-0.2
+0.2
+0.1
-0.3
+0.9
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.1
+0.4
+0.0
+0.3
+0.3
stress
Bacitracin 1 mg/ml
+0.2
-0.1
+0.1
+0.7
+0.2
carbon source
D-Lactate (C)
-0.0
-0.1
+0.1
+0.6
+0.8
stress
Lomefloxacin 0.0004 mM
+0.1
-0.1
+0.3
+0.2
+0.8
carbon source
L-Lactate (C)
+0.2
+0.1
+0.1
+0.8
+0.5
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