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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3106 and PfGW456L13_3107 overlap by 1 nucleotides
PfGW456L13_3107 and PfGW456L13_3108 are separated by 2 nucleotides
PfGW456L13_3108 and PfGW456L13_3109 are separated by 810 nucleotides
PfGW456L13_3109 and PfGW456L13_3110 are separated by 274 nucleotides
PfGW456L13_3106 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 3,469,488 to 3,471,629
_3106
PfGW456L13_3107 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 3,471,629 to 3,473,410
_3107
PfGW456L13_3108 - hypothetical protein, at 3,473,413 to 3,475,143
_3108
PfGW456L13_3109 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 3,475,954 to 3,477,471
_3109
PfGW456L13_3110 - GTPase subunit of restriction endonuclease, at 3,477,746 to 3,480,217
_3110
Group
Condition
PfGW456L13
_3106
PfGW456L13
_3107
PfGW456L13
_3108
PfGW456L13
_3109
PfGW456L13
_3110
carbon source
L-Arabinose (C)
-0.3
-2.9
-0.2
-0.2
-0.1
carbon source
octanoate (C)
-0.2
-1.7
-0.2
-0.6
-0.3
carbon source
a-Ketoglutaric (C)
-0.1
-1.4
-0.7
-0.7
+0.1
carbon source
L-Tryptophan (C)
-0.2
-0.7
-0.7
-0.7
-0.1
carbon source
D-Fructose (C)
-0.1
-1.2
-0.8
-0.2
-0.1
carbon source
D-Lactate (C)
+0.1
-1.8
-0.3
-0.0
-0.2
carbon source
L-Malic (C)
-0.1
-1.2
-0.5
-0.4
-0.1
carbon source
L-Tryptophan (C)
-0.2
-0.9
-0.6
-0.4
-0.1
carbon source
Glycerol (C)
-0.0
-1.5
-0.2
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
-0.2
-1.1
-0.4
-0.3
+0.1
carbon source
L-Arabinose (C)
-0.3
-0.8
-0.3
-0.3
-0.2
carbon source
D-Mannose (C)
-0.2
-0.9
-0.4
-0.2
-0.0
carbon source
D-Galactose (C)
-0.1
-0.5
-0.5
-0.4
-0.4
carbon source
D-Alanine (C)
-0.2
-0.8
-0.3
-0.4
-0.0
carbon source
D-Gluconic Acid (C)
-0.0
-1.4
-0.2
-0.2
-0.0
carbon source
Putrescine (C)
-0.2
-0.7
-0.4
-0.2
-0.1
nitrogen source
Gly-Glu (N)
-0.1
-1.0
-0.2
-0.2
-0.0
carbon source
D-Galactose (C)
-0.3
-0.1
-0.4
-0.6
-0.1
carbon source
casaminos (C)
-0.1
-0.6
-0.2
-0.2
-0.1
carbon source
D-Fructose (C)
-0.2
-0.6
-0.3
-0.0
-0.2
nitrogen source
L-Leucine (N)
-0.1
-0.6
-0.2
-0.2
-0.0
carbon source
Glycerol (C)
-0.2
-0.3
-0.1
-0.5
-0.0
stress
A22 0.04 mg/ml
-0.1
-0.7
-0.1
-0.2
-0.0
carbon source
D,L-Lactate (C)
-0.4
+0.0
-0.2
-0.4
-0.1
carbon source
D-Serine (C)
+0.0
-0.7
-0.3
+0.1
+0.1
stress
Lomefloxacin 0.0004 mM
+0.1
+0.5
-0.1
-0.1
-0.2
control
LB control
+0.2
+0.6
-0.2
-0.2
+0.0
nitrogen source
D-Serine (N)
+0.0
+0.6
+0.1
+0.3
+0.1
stress
Aluminum chloride 2.5 mM
+0.1
+0.6
+0.2
+0.2
+0.0
stress
Aluminum chloride 5 mM
+0.2
+0.6
+0.2
+0.6
-0.0
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