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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3086 and PfGW456L13_3087 are separated by 125 nucleotides
PfGW456L13_3087 and PfGW456L13_3088 are separated by 100 nucleotides
PfGW456L13_3088 and PfGW456L13_3089 overlap by 23 nucleotides
PfGW456L13_3089 and PfGW456L13_3090 are separated by 198 nucleotides
PfGW456L13_3086 - DinG family ATP-dependent helicase CPE1197, at 3,438,461 to 3,440,740
_3086
PfGW456L13_3087 - hypothetical protein, at 3,440,866 to 3,441,768
_3087
PfGW456L13_3088 - Two-component hybrid sensor and regulator, at 3,441,869 to 3,443,785
_3088
PfGW456L13_3089 - sodium/hydrogen exchanger family protein, at 3,443,763 to 3,445,124
_3089
PfGW456L13_3090 - putative aminotransferase, at 3,445,323 to 3,446,477
_3090
Group
Condition
PfGW456L13
_3086
PfGW456L13
_3087
PfGW456L13
_3088
PfGW456L13
_3089
PfGW456L13
_3090
carbon source
D-Lactate (C)
+0.1
-0.2
-0.0
-0.7
-0.0
nitrogen source
D-Serine (N)
-0.2
-0.0
+0.1
-0.4
-0.2
stress
Cisplatin 0.0125 mg/ml
-0.5
-0.1
+0.0
-0.1
-0.1
stress
Aluminum chloride 5 mM
-0.2
+0.0
+0.0
-0.3
-0.2
carbon source
L-Malic (C)
-0.3
-0.1
+0.1
-0.3
-0.0
carbon source
D,L-Lactate (C)
-0.1
+0.1
-0.3
-0.1
+0.1
carbon source
succinate (C)
-0.0
-0.0
+0.1
-0.4
+0.1
carbon source
L-Alanine (C)
+0.1
+0.1
-0.1
-0.3
+0.1
carbon source
Putrescine (C)
+0.2
+0.0
-0.2
-0.3
+0.1
stress
Lomefloxacin 0.0004 mM
-0.2
-0.1
-0.2
+0.1
+0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.0
+0.1
-0.1
+0.3
-0.4
nitrogen source
Gly-Glu (N)
+0.1
-0.1
+0.2
+0.1
-0.3
carbon source
L-Valine (C)
-0.1
-0.1
+0.1
+0.4
-0.0
carbon source
L-Arabinose (C)
-0.0
-0.2
-0.0
+0.6
-0.0
carbon source
D-Galactose (C)
+0.0
-0.3
-0.1
+0.5
+0.4
carbon source
D-Lactate (C)
-0.1
+0.0
+0.2
+0.4
+0.0
carbon source
Glycerol (C)
+0.1
+0.1
-0.1
+0.4
-0.0
carbon source
L-Glutamine (C)
+0.1
-0.1
+0.1
+0.4
+0.1
carbon source
D-Fructose (C)
-0.0
+0.1
+0.1
+0.4
-0.0
carbon source
L-Valine (C)
+0.2
-0.1
+0.2
+0.3
+0.2
carbon source
L-Lactate (C)
+0.0
+0.4
+0.1
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.1
+0.0
+0.1
+0.4
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.0
+0.3
+0.4
-0.0
carbon source
Glycerol (C)
+0.1
+0.1
+0.1
+0.3
+0.1
carbon source
D-Mannose (C)
+0.1
+0.0
+0.0
+0.4
+0.2
carbon source
a-Ketoglutaric (C)
+0.2
+0.2
+0.2
+0.6
-0.3
stress
Cobalt chloride 0.16 mM
+0.0
+0.0
+0.2
+0.3
+0.3
carbon source
D-Gluconic Acid (C)
+0.0
+0.0
+0.1
+0.2
+0.5
carbon source
D-Gluconic Acid (C)
+0.1
+0.1
+0.2
+0.3
+0.2
carbon source
L-Histidine (C)
+0.1
+0.1
+0.1
+0.6
+0.1
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