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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3059 and PfGW456L13_3060 overlap by 1 nucleotides
PfGW456L13_3060 and PfGW456L13_3061 are separated by 12 nucleotides
PfGW456L13_3061 and PfGW456L13_3062 are separated by 264 nucleotides
PfGW456L13_3062 and PfGW456L13_3063 are separated by 270 nucleotides
PfGW456L13_3059 - Outer membrane protein OprN, at 3,399,750 to 3,401,171
_3059
PfGW456L13_3060 - Multidrug efflux transporter MexF, at 3,401,171 to 3,404,350
_3060
PfGW456L13_3061 - Multidrug efflux membrane fusion protein MexE, at 3,404,363 to 3,405,616
_3061
PfGW456L13_3062 - Transcriptional regulator MexT, at 3,405,881 to 3,406,798
_3062
PfGW456L13_3063 - Quinone oxidoreductase (EC 1.6.5.5), at 3,407,069 to 3,408,091
_3063
Group
Condition
PfGW456L13
_3059
PfGW456L13
_3060
PfGW456L13
_3061
PfGW456L13
_3062
PfGW456L13
_3063
stress
Lomefloxacin 0.0004 mM
-0.5
-0.2
-0.2
-1.1
N.D.
carbon source
Trisodium citrate (C)
-0.6
-0.5
-0.2
-0.3
N.D.
carbon source
D-Lactate (C)
-1.1
-0.1
-0.3
+0.1
N.D.
stress
Vancomycin 0.5 mg/ml
-0.9
-0.2
-0.2
-0.0
N.D.
carbon source
Putrescine (C)
-0.4
-0.3
-0.5
-0.1
N.D.
carbon source
D-Fructose (C)
-0.9
-0.2
-0.4
+0.3
N.D.
nitrogen source
D-Serine (N)
-0.6
-0.3
-0.1
-0.1
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.8
-0.1
+0.1
-0.2
N.D.
carbon source
L-Tryptophan (C)
-0.6
-0.0
-0.3
-0.1
N.D.
carbon source
D-Serine (C)
-0.4
-0.2
-0.2
-0.0
N.D.
carbon source
D-Fructose (C)
-0.2
-0.1
-0.8
+0.3
N.D.
stress
Vancomycin 0.25 mg/ml
-0.4
-0.0
-0.2
-0.0
N.D.
carbon source
L-Malic (C)
-0.3
-0.1
+0.0
-0.4
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
-0.2
+0.1
-0.3
N.D.
carbon source
L-Glutamine (C)
-0.5
+0.0
-0.2
-0.0
N.D.
carbon source
L-Arabinose (C)
-0.3
-0.2
+0.1
-0.1
N.D.
carbon source
D-Gluconic Acid (C)
-0.3
-0.2
-0.3
+0.1
N.D.
nitrogen source
L-Proline (N)
-0.4
-0.1
-0.2
+0.1
N.D.
carbon source
D-Galactose (C)
-0.4
-0.2
-0.2
+0.2
N.D.
stress
Bacitracin 1 mg/ml
-0.4
-0.1
+0.0
-0.1
N.D.
carbon source
L-Lactate (C)
-0.4
-0.1
+0.1
-0.3
N.D.
carbon source
L-Glutamine (C)
-0.3
-0.3
+0.2
-0.0
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
-0.3
-0.2
-0.1
N.D.
carbon source
D-Lactate (C)
-0.8
-0.0
+0.2
+0.2
N.D.
carbon source
L-Valine (C)
-0.2
-0.1
-0.2
+0.2
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
-0.1
+0.2
+0.1
N.D.
carbon source
Tween 20 (C)
-0.3
-0.1
+0.3
-0.1
N.D.
carbon source
L-Histidine (C)
-0.0
-0.2
+0.3
-0.1
N.D.
carbon source
octanoate (C)
-0.5
+0.0
+0.2
+0.1
N.D.
carbon source
Glycerol (C)
-0.3
+0.1
+0.2
+0.2
N.D.
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