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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3046 and PfGW456L13_3047 are separated by 74 nucleotides
PfGW456L13_3047 and PfGW456L13_3048 are separated by 247 nucleotides
PfGW456L13_3048 and PfGW456L13_3049 overlap by 1 nucleotides
PfGW456L13_3049 and PfGW456L13_3050 overlap by 4 nucleotides
PfGW456L13_3046 - Glycosyltransferase, at 3,383,576 to 3,384,874
_3046
PfGW456L13_3047 - Response regulator, at 3,384,949 to 3,385,311
_3047
PfGW456L13_3048 - Signal transduction histidine kinase, at 3,385,559 to 3,389,050
_3048
PfGW456L13_3049 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,389,050 to 3,389,883
_3049
PfGW456L13_3050 - hypothetical protein, at 3,389,880 to 3,390,056
_3050
Group
Condition
PfGW456L13
_3046
PfGW456L13
_3047
PfGW456L13
_3048
PfGW456L13
_3049
PfGW456L13
_3050
carbon source
L-Arabinose (C)
+0.2
-2.7
+0.1
-0.2
-0.1
stress
Lomefloxacin 0.0004 mM
-0.6
-0.9
+0.3
-0.4
-0.7
carbon source
succinate (C)
-0.1
-2.1
+0.2
-0.4
+0.4
nitrogen source
Gly-DL-Asp (N)
+0.1
-1.1
+0.1
-0.5
-0.2
carbon source
Putrescine (C)
+0.1
-0.1
-0.0
-1.0
-0.3
carbon source
D-Gluconic Acid (C)
-0.4
-0.0
-0.0
-1.1
+0.3
carbon source
L-Lactate (C)
-0.4
+0.3
+0.1
-0.4
-0.5
carbon source
D-Fructose (C)
-0.6
+0.5
-0.2
-0.4
+0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-1.0
+0.0
+0.4
+0.3
stress
Benzethonium chloride 0.0125 mM
-0.2
+0.7
-0.1
+0.1
-0.9
carbon source
D-Lactate (C)
-0.1
-0.2
-0.1
-0.7
+0.8
carbon source
L-Alanine (C)
+0.1
-0.8
+0.0
+0.3
+0.6
carbon source
D-Fructose (C)
-0.2
+0.6
+0.0
-0.5
+0.3
carbon source
D-Serine (C)
-0.1
-1.1
+0.0
+1.1
+0.4
carbon source
Trisodium citrate (C)
-0.3
+1.3
-0.1
-0.1
-0.0
carbon source
a-Ketoglutaric (C)
-0.1
+0.7
-0.0
-0.2
+0.6
carbon source
D-Alanine (C)
-0.4
+0.8
-0.1
-0.1
+0.8
carbon source
L-Asparagine (C)
-0.4
+1.2
+0.1
-0.3
+0.4
carbon source
D-Glucose (C)
-0.0
+1.3
+0.1
-0.2
+0.0
carbon source
casaminos (C)
-0.0
+0.8
-0.1
-0.1
+0.6
carbon source
D-Galactose (C)
-0.1
+1.0
+0.2
-0.1
+0.3
carbon source
L-Phenylalanine (C)
-0.2
+0.6
+0.0
+0.2
+0.7
stress
nitrate 200 mM
-0.1
-0.1
+0.1
+0.7
+0.8
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
+1.0
+0.1
+0.3
+0.5
carbon source
L-Tryptophan (C)
+0.2
-0.3
+0.3
+0.5
+1.3
carbon source
L-Arabinose (C)
-0.1
+2.3
-0.2
+0.3
+0.4
carbon source
D-Serine (C)
-0.3
+1.0
-0.1
+1.5
+0.6
carbon source
L-Histidine (C)
-0.1
+0.8
-0.0
+1.3
+0.8
carbon source
octanoate (C)
+0.1
+1.1
+0.2
+0.3
+1.3
carbon source
L-Tryptophan (C)
-0.1
+0.9
+0.0
+0.5
+1.8
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