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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_3004 and PfGW456L13_3005 are separated by 286 nucleotides
PfGW456L13_3005 and PfGW456L13_3006 are separated by 483 nucleotides
PfGW456L13_3006 and PfGW456L13_3007 are separated by 60 nucleotides
PfGW456L13_3007 and PfGW456L13_3008 are separated by 106 nucleotides
PfGW456L13_3004 - Cell surface protein, at 3,346,922 to 3,348,211
_3004
PfGW456L13_3005 - FIG00960186: hypothetical protein, at 3,348,498 to 3,348,764
_3005
PfGW456L13_3006 - Sigma-54 dependent transcriptional regulator, at 3,349,248 to 3,350,432
_3006
PfGW456L13_3007 - Fap amyloid fiber secretin, at 3,350,493 to 3,351,722
_3007
PfGW456L13_3008 - Fap system putative outer membrane protein, at 3,351,829 to 3,352,572
_3008
Group
Condition
PfGW456L13
_3004
PfGW456L13
_3005
PfGW456L13
_3006
PfGW456L13
_3007
PfGW456L13
_3008
carbon source
octanoate (C)
+0.0
-1.7
-0.1
+0.0
-1.0
carbon source
L-Glutamine (C)
-0.0
-1.0
-0.4
+0.0
-0.3
carbon source
Putrescine (C)
-0.1
-0.0
-0.3
-0.1
-0.6
carbon source
L-Malic (C)
+0.0
-1.2
-0.1
+0.0
+0.2
stress
Lomefloxacin 0.0004 mM
-0.3
-1.1
-0.0
+0.4
-0.0
carbon source
D-Fructose (C)
-0.1
-1.2
+0.0
-0.0
+0.3
carbon source
D-Glucose (C)
-0.0
-0.7
+0.2
-0.4
+0.0
carbon source
Tween 20 (C)
-0.0
-0.2
-0.1
-0.4
-0.2
nitrogen source
L-Proline (N)
+0.2
-0.9
+0.2
+0.1
-0.1
stress
Vancomycin 0.5 mg/ml
+0.1
-0.6
-0.1
+0.1
+0.0
carbon source
D-Fructose (C)
+0.3
-1.3
+0.2
+0.1
+0.3
carbon source
D-Gluconic Acid (C)
+0.3
-0.5
-0.0
-0.2
+0.0
control
LB control
-0.2
-0.4
+0.1
+0.2
+0.1
carbon source
D-Galactose (C)
+0.0
-0.5
-0.0
+0.1
+0.1
stress
Vancomycin 0.25 mg/ml
+0.1
-0.3
-0.1
+0.2
-0.1
carbon source
L-Phenylalanine (C)
-0.1
-0.4
+0.2
+0.0
+0.1
carbon source
a-Ketoglutaric (C)
+0.2
-0.7
+0.1
+0.1
+0.2
nitrogen source
L-Glutamine (N)
+0.1
-0.3
+0.1
+0.2
-0.1
nitrogen source
Ammonium chloride (N)
+0.2
-0.4
+0.0
+0.3
-0.1
carbon source
D-Lactate (C)
-0.0
+0.1
+0.3
-0.1
-0.3
stress
Vancomycin 0.125 mg/ml
+0.0
-0.6
-0.0
+0.1
+0.5
carbon source
succinate (C)
-0.1
+0.4
+0.1
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.1
+0.5
-0.0
+0.1
-0.4
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
+0.4
-0.1
-0.0
+0.1
carbon source
L-Malic (C)
-0.0
+0.3
+0.2
+0.0
-0.3
carbon source
D-Mannose (C)
-0.0
+0.2
-0.1
+0.1
+0.4
lb
LB
-0.0
+0.4
+0.2
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
-0.3
+0.9
+0.1
+0.1
-0.2
nitrogen source
D-Alanine (N)
+0.2
+0.2
+0.3
+0.0
+0.2
carbon source
L-Valine (C)
+0.1
+0.5
-0.0
+0.2
+0.1
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