Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_3004 and PfGW456L13_3005 are separated by 286 nucleotidesPfGW456L13_3005 and PfGW456L13_3006 are separated by 483 nucleotidesPfGW456L13_3006 and PfGW456L13_3007 are separated by 60 nucleotidesPfGW456L13_3007 and PfGW456L13_3008 are separated by 106 nucleotides PfGW456L13_3004 - Cell surface protein, at 3,346,922 to 3,348,211 _3004 PfGW456L13_3005 - FIG00960186: hypothetical protein, at 3,348,498 to 3,348,764 _3005 PfGW456L13_3006 - Sigma-54 dependent transcriptional regulator, at 3,349,248 to 3,350,432 _3006 PfGW456L13_3007 - Fap amyloid fiber secretin, at 3,350,493 to 3,351,722 _3007 PfGW456L13_3008 - Fap system putative outer membrane protein, at 3,351,829 to 3,352,572 _3008
Group Condition PfGW456L13_3004 PfGW456L13_3005 PfGW456L13_3006 PfGW456L13_3007 PfGW456L13_3008
carbon source octanoate (C) +0.0 -1.7 -0.1 +0.0 -1.0
carbon source L-Glutamine (C) -0.0 -1.0 -0.4 +0.0 -0.3
carbon source Putrescine (C) -0.1 -0.0 -0.3 -0.1 -0.6
carbon source L-Malic (C) +0.0 -1.2 -0.1 +0.0 +0.2
stress Lomefloxacin 0.0004 mM -0.3 -1.1 -0.0 +0.4 -0.0
carbon source D-Fructose (C) -0.1 -1.2 +0.0 -0.0 +0.3
carbon source D-Glucose (C) -0.0 -0.7 +0.2 -0.4 +0.0
carbon source Tween 20 (C) -0.0 -0.2 -0.1 -0.4 -0.2
nitrogen source L-Proline (N) +0.2 -0.9 +0.2 +0.1 -0.1
stress Vancomycin 0.5 mg/ml +0.1 -0.6 -0.1 +0.1 +0.0
carbon source D-Fructose (C) +0.3 -1.3 +0.2 +0.1 +0.3
carbon source D-Gluconic Acid (C) +0.3 -0.5 -0.0 -0.2 +0.0
control LB control -0.2 -0.4 +0.1 +0.2 +0.1
carbon source D-Galactose (C) +0.0 -0.5 -0.0 +0.1 +0.1
stress Vancomycin 0.25 mg/ml +0.1 -0.3 -0.1 +0.2 -0.1
carbon source L-Phenylalanine (C) -0.1 -0.4 +0.2 +0.0 +0.1
carbon source a-Ketoglutaric (C) +0.2 -0.7 +0.1 +0.1 +0.2
nitrogen source L-Glutamine (N) +0.1 -0.3 +0.1 +0.2 -0.1
nitrogen source Ammonium chloride (N) +0.2 -0.4 +0.0 +0.3 -0.1
carbon source D-Lactate (C) -0.0 +0.1 +0.3 -0.1 -0.3
stress Vancomycin 0.125 mg/ml +0.0 -0.6 -0.0 +0.1 +0.5
carbon source succinate (C) -0.1 +0.4 +0.1 -0.1 -0.2
carbon source D,L-Lactate (C) -0.1 +0.5 -0.0 +0.1 -0.4
stress KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x -0.2 +0.4 -0.1 -0.0 +0.1
carbon source L-Malic (C) -0.0 +0.3 +0.2 +0.0 -0.3
carbon source D-Mannose (C) -0.0 +0.2 -0.1 +0.1 +0.4
lb LB -0.0 +0.4 +0.2 +0.1 -0.1
carbon source a-Ketoglutaric (C) -0.3 +0.9 +0.1 +0.1 -0.2
nitrogen source D-Alanine (N) +0.2 +0.2 +0.3 +0.0 +0.2
carbon source L-Valine (C) +0.1 +0.5 -0.0 +0.2 +0.1
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