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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_28 and PfGW456L13_29 are separated by 656 nucleotides
PfGW456L13_29 and PfGW456L13_30 are separated by 223 nucleotides
PfGW456L13_30 and PfGW456L13_31 are separated by 2 nucleotides
PfGW456L13_31 and PfGW456L13_32 are separated by 58 nucleotides
PfGW456L13_28 - Methyl-accepting chemotaxis protein, at 32,307 to 34,253
_28
PfGW456L13_29 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 34,910 to 36,187
_29
PfGW456L13_30 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 36,411 to 37,763
_30
PfGW456L13_31 - Acyl dehydratase, at 37,766 to 38,620
_31
PfGW456L13_32 - hypothetical protein, at 38,679 to 39,035
_32
Group
Condition
PfGW456L13
_28
PfGW456L13
_29
PfGW456L13
_30
PfGW456L13
_31
PfGW456L13
_32
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-0.3
-0.7
-1.2
carbon source
D-Fructose (C)
-0.1
+0.1
-0.1
-0.3
-0.7
control
LB control
-0.1
+0.0
+0.0
-0.4
-0.5
nitrogen source
D-Serine (N)
-0.1
-0.1
-0.3
-0.2
-0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.1
+0.0
+0.1
+0.2
-0.9
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.1
+0.2
-0.1
-0.1
-0.5
control
LB control
-0.2
+0.2
+0.1
-0.3
-0.3
carbon source
L-Valine (C)
-0.1
+0.2
+0.1
-0.1
-0.6
carbon source
D-Glucose (C)
+0.1
+0.2
-0.0
+0.1
-0.7
carbon source
L-Arabinose (C)
-0.0
+0.0
-0.0
+0.5
-0.8
carbon source
Putrescine (C)
-0.1
+0.3
+0.2
-0.9
+0.3
stress
Bacitracin 1 mg/ml
+0.1
-0.4
-0.0
+0.3
-0.1
nitrogen source
L-Phenylalanine (N)
+0.1
+0.1
-0.1
-0.4
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
+0.1
+0.3
+0.4
-0.6
nitrogen source
L-Aspartic Acid (N)
+0.2
-0.2
+0.2
+0.3
-0.1
carbon source
a-Ketoglutaric (C)
+0.1
+0.5
+0.1
-0.3
+0.1
carbon source
L-Arabinose (C)
-0.2
+0.2
+0.1
+0.7
-0.1
carbon source
L-Valine (C)
-0.1
+0.0
+0.1
+0.4
+0.4
nitrogen source
Ammonium chloride (N)
+0.1
-0.1
+0.2
+0.4
+0.3
stress
Dimethyl Sulfoxide 7.5 vol%
+0.1
+0.3
+0.2
+0.1
+0.3
carbon source
D-Lactate (C)
+0.1
-0.0
+0.2
+0.2
+0.5
carbon source
D,L-Lactate (C)
-0.0
-0.1
+0.1
+0.4
+0.8
carbon source
D-Mannose (C)
+0.0
+0.1
+0.2
+0.4
+0.5
carbon source
Tween 20 (C)
+0.2
+0.2
+0.1
+0.3
+0.5
carbon source
D-Fructose (C)
+0.1
+0.3
+0.3
+0.2
+0.5
carbon source
L-Lactate (C)
+0.1
+0.7
+0.1
+0.4
-0.0
carbon source
D-Gluconic Acid (C)
+0.3
+0.5
+0.2
+0.7
-0.2
carbon source
D-Gluconic Acid (C)
-0.1
+0.5
+0.3
+0.3
+0.5
carbon source
L-Malic (C)
-0.1
+0.5
+0.1
+0.6
+0.5
carbon source
octanoate (C)
+0.1
+0.4
-0.1
+1.3
+0.2
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