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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_2915 and PfGW456L13_2916 are separated by 4 nucleotides
PfGW456L13_2916 and PfGW456L13_2917 are separated by 117 nucleotides
PfGW456L13_2917 and PfGW456L13_2918 are separated by 37 nucleotides
PfGW456L13_2918 and PfGW456L13_2919 are separated by 201 nucleotides
PfGW456L13_2915 - Alkylated DNA repair protein AlkB, at 3,255,661 to 3,256,326
_2915
PfGW456L13_2916 - hypothetical protein, at 3,256,331 to 3,257,035
_2916
PfGW456L13_2917 - FIG00958580: hypothetical protein, at 3,257,153 to 3,257,320
_2917
PfGW456L13_2918 - FIG00954920: hypothetical protein, at 3,257,358 to 3,257,660
_2918
PfGW456L13_2919 - FIG00958773: hypothetical protein, at 3,257,862 to 3,258,218
_2919
Group
Condition
PfGW456L13
_2915
PfGW456L13
_2916
PfGW456L13
_2917
PfGW456L13
_2918
PfGW456L13
_2919
carbon source
Putrescine (C)
-0.9
-0.4
+0.1
-0.3
N.D.
lb
LB
-0.2
-0.4
-0.1
-0.5
N.D.
stress
nitrate 200 mM
-0.3
-0.1
-0.2
-0.5
N.D.
stress
A22 0.04 mg/ml
-0.3
-0.3
+0.1
-0.3
N.D.
carbon source
L-Glutamine (C)
-0.1
-0.7
-0.2
+0.2
N.D.
carbon source
L-Arabinose (C)
+0.2
+0.3
+0.1
-1.3
N.D.
carbon source
D-Galactose (C)
-0.0
-0.2
+0.2
-0.7
N.D.
carbon source
Glycerol (C)
+0.4
-0.4
+0.0
-0.7
N.D.
nitrogen source
L-Proline (N)
+0.2
-0.2
+0.0
-0.6
N.D.
stress
Thallium(I) acetate 0.004 mg/ml
-0.1
+0.1
+0.5
-1.0
N.D.
stress
Vancomycin 0.125 mg/ml
-0.3
-0.4
+0.0
+0.3
N.D.
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.2
-0.3
+0.3
+0.1
N.D.
stress
Aluminum chloride 5 mM
+0.3
-0.1
+0.2
-0.3
N.D.
stress
Paraquat dichloride 0.032 mg/ml
+0.3
+0.2
+0.1
-0.7
N.D.
carbon source
D-Glucose (C)
+0.2
-0.5
-0.1
+0.4
N.D.
carbon source
D-Fructose (C)
-0.4
+0.0
+0.4
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
+0.3
+0.3
-0.1
N.D.
stress
Lomefloxacin 0.0004 mM
+0.1
-0.4
+0.2
+0.4
N.D.
carbon source
a-Ketoglutaric (C)
+0.1
-0.4
+0.5
+0.0
N.D.
carbon source
L-Tryptophan (C)
+0.0
-0.4
+0.2
+0.5
N.D.
stress
Cephalothin 3 mg/ml
-0.0
-0.3
+0.0
+0.7
N.D.
carbon source
D,L-Lactate (C)
+0.1
-0.4
+0.6
+0.1
N.D.
carbon source
L-Histidine (C)
-0.2
-0.1
+0.3
+0.4
N.D.
stress
D-Cycloserine 0.125 mg/ml
+0.1
-0.2
+0.2
+0.5
N.D.
carbon source
L-Alanine (C)
-0.2
+0.1
+0.1
+0.7
N.D.
carbon source
L-Malic (C)
+0.6
-0.0
-0.1
+0.3
N.D.
carbon source
D-Lactate (C)
-0.1
+0.1
-0.3
+1.1
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
-0.0
+0.3
+0.3
N.D.
carbon source
octanoate (C)
+0.3
-0.3
+0.7
+0.2
N.D.
carbon source
D-Fructose (C)
-0.0
+0.2
+0.1
+1.0
N.D.
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