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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2873 and PfGW456L13_2874 are separated by 7 nucleotides
PfGW456L13_2874 and PfGW456L13_2875 are separated by 286 nucleotides
PfGW456L13_2875 and PfGW456L13_2876 are separated by 154 nucleotides
PfGW456L13_2876 and PfGW456L13_2877 are separated by 13 nucleotides
PfGW456L13_2873 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 3,199,649 to 3,200,422
_2873
PfGW456L13_2874 - D-beta-hydroxybutyrate permease, at 3,200,430 to 3,201,821
_2874
PfGW456L13_2875 - Sigma-54 dependent transcriptional regulator, at 3,202,108 to 3,203,523
_2875
PfGW456L13_2876 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 3,203,678 to 3,205,255
_2876
PfGW456L13_2877 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 3,205,269 to 3,206,291
_2877
Group
Condition
PfGW456L13
_2873
PfGW456L13
_2874
PfGW456L13
_2875
PfGW456L13
_2876
PfGW456L13
_2877
carbon source
L-Phenylalanine (C)
-2.2
-2.2
-3.1
-0.1
-0.1
carbon source
L-Phenylalanine (C)
-1.5
-1.2
-2.4
+0.0
-0.0
carbon source
L-Valine (C)
-0.8
-0.6
-0.7
-0.1
-0.3
carbon source
L-Valine (C)
-0.6
-0.4
-0.7
-0.1
-0.0
carbon source
D,L-Lactate (C)
-0.6
-0.7
-0.3
+0.1
+0.2
carbon source
L-Arabinose (C)
-0.1
-0.8
-0.3
-0.0
+0.1
stress
nitrite 10 mM
-0.2
-0.3
-0.2
-0.2
-0.2
carbon source
D-Galactose (C)
-0.1
-0.5
-0.2
-0.2
+0.1
carbon source
D-Lactate (C)
-0.7
-0.1
+0.1
-0.3
+0.0
carbon source
Glycerol (C)
+0.2
-0.3
-0.1
-0.1
-0.5
lb
LB
+0.5
-0.9
+0.1
-0.2
-0.0
carbon source
a-Ketoglutaric (C)
-0.7
+0.3
-0.1
+0.1
+0.2
carbon source
L-Asparagine (C)
-0.2
-0.3
-0.1
+0.2
+0.1
nitrogen source
L-Asparagine (N)
-0.2
+0.3
-0.1
-0.1
-0.1
carbon source
L-Asparagine (C)
+0.2
-0.3
-0.2
-0.1
+0.1
stress
Aluminum chloride 2.5 mM
+0.1
-0.5
-0.1
+0.2
+0.1
stress
Thallium(I) acetate 0.002 mg/ml
-0.4
+0.4
+0.1
-0.1
-0.1
nitrogen source
Gly-Glu (N)
-0.3
+0.4
+0.0
-0.2
+0.1
stress
Lomefloxacin 0.0004 mM
+0.0
-0.5
+0.5
+0.2
-0.1
nitrogen source
Uridine (N)
-0.3
+0.3
+0.1
+0.1
-0.1
carbon source
L-Arabinose (C)
+0.2
-0.2
+0.1
+0.2
-0.1
carbon source
L-Malic (C)
-0.1
-0.4
+0.4
+0.0
+0.3
stress
Paraquat dichloride 0.032 mg/ml
-0.3
+0.5
+0.2
+0.1
+0.1
carbon source
L-Tryptophan (C)
-0.1
+0.4
+0.0
+0.3
+0.1
carbon source
D-Glucose (C)
-0.1
+0.3
+0.1
+0.3
+0.1
stress
Bacitracin 1 mg/ml
+0.2
+0.4
+0.1
+0.2
-0.0
stress
Fusidic 0.08 mg/ml
+0.3
+0.3
-0.0
+0.0
+0.3
carbon source
D-Gluconic Acid (C)
+0.7
-0.1
+0.1
-0.1
+0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.4
+0.2
+0.2
+0.2
+0.0
carbon source
succinate (C)
+0.5
+0.4
+0.3
-0.1
+0.3
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