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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_2838 and PfGW456L13_2839 are separated by 64 nucleotides
PfGW456L13_2839 and PfGW456L13_2840 are separated by 201 nucleotides
PfGW456L13_2840 and PfGW456L13_2841 are separated by 185 nucleotides
PfGW456L13_2841 and PfGW456L13_2842 are separated by 51 nucleotides
PfGW456L13_2838 - SCP-2 sterol transfer family protein, at 3,145,053 to 3,145,367
_2838
PfGW456L13_2839 - Phosphoglycerate mutase family protein, at 3,145,432 to 3,146,142
_2839
PfGW456L13_2840 - Peptidase, U7 family, at 3,146,344 to 3,147,366
_2840
PfGW456L13_2841 - Leucine-rich repeat domain protein, at 3,147,552 to 3,151,439
_2841
PfGW456L13_2842 - required for sulfate utilization, putative electron transport protein for sulfite reductase
(from data)
, at 3,151,491 to 3,151,985
_2842
Group
Condition
PfGW456L13
_2838
PfGW456L13
_2839
PfGW456L13
_2840
PfGW456L13
_2841
PfGW456L13
_2842
carbon source
L-Tryptophan (C)
N.D.
-0.6
-0.0
+0.0
-6.1
carbon source
D-Fructose (C)
N.D.
-0.3
-0.7
-0.1
-5.7
carbon source
L-Tryptophan (C)
N.D.
-0.2
-0.2
-0.0
-6.2
carbon source
Trisodium citrate (C)
N.D.
+0.2
-0.0
+0.0
-6.6
carbon source
L-Asparagine (C)
N.D.
-0.2
+0.0
+0.0
-6.4
carbon source
L-Arabinose (C)
N.D.
-0.5
-0.2
-0.1
-5.7
carbon source
Putrescine (C)
N.D.
-0.7
-0.6
-0.1
-5.0
carbon source
L-Histidine (C)
N.D.
-0.1
+0.1
-0.1
-6.2
carbon source
L-Lactate (C)
N.D.
-0.7
-0.2
-0.1
-5.3
nitrogen source
L-Lysine (N)
N.D.
-0.2
-0.1
+0.0
-6.0
nitrogen source
L-Glutamine (N)
N.D.
-0.1
-0.1
+0.0
-5.9
carbon source
L-Glutamine (C)
N.D.
-0.7
-0.2
-0.1
-5.1
carbon source
D-Lactate (C)
N.D.
+0.1
+0.2
-0.1
-6.2
nitrogen source
NAG (N)
N.D.
-0.1
-0.1
+0.1
-5.9
nitrogen source
Cytosine (N)
N.D.
-0.1
-0.1
-0.0
-5.7
nitrogen source
D-Alanine (N)
N.D.
+0.0
+0.1
+0.0
-6.0
carbon source
D,L-Lactate (C)
N.D.
-0.4
+0.1
-0.1
-5.5
carbon source
L-Asparagine (C)
N.D.
-0.0
-0.2
+0.0
-5.7
nitrogen source
nitrate (N)
N.D.
+0.0
+0.0
+0.1
-5.9
nitrogen source
L-Glutamic (N)
N.D.
-0.2
+0.1
+0.0
-5.6
carbon source
L-Phenylalanine (C)
N.D.
-0.2
+0.3
-0.0
-5.8
nitrogen source
Putrescine (N)
N.D.
+0.0
+0.2
+0.1
-5.9
nitrogen source
Ammonium chloride (N)
N.D.
-0.3
+0.1
+0.1
-5.6
carbon source
a-Ketoglutaric (C)
N.D.
+0.3
+0.1
-0.1
-5.9
carbon source
D-Glucose (C)
N.D.
+0.2
+0.1
-0.1
-5.7
carbon source
L-Malic (C)
N.D.
-0.4
+0.2
-0.1
-5.2
nitrogen source
Glycine (N)
N.D.
-0.1
+0.3
+0.0
-5.6
nitrogen source
L-Proline (N)
N.D.
+0.3
+0.2
+0.1
-5.9
carbon source
D-Fructose (C)
N.D.
+0.4
+0.2
+0.1
-5.3
carbon source
a-Ketoglutaric (C)
N.D.
+0.6
+0.5
+0.1
-5.2
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