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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2820 and PfGW456L13_2821 are separated by 7 nucleotides
PfGW456L13_2821 and PfGW456L13_2822 overlap by 4 nucleotides
PfGW456L13_2822 and PfGW456L13_2823 are separated by 132 nucleotides
PfGW456L13_2823 and PfGW456L13_2824 are separated by 12 nucleotides
PfGW456L13_2820 - RecA/RadA recombinase, at 3,124,954 to 3,125,571
_2820
PfGW456L13_2821 - DNA polymerase-like protein PA0670, at 3,125,579 to 3,126,994
_2821
PfGW456L13_2822 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 3,126,991 to 3,130,068
_2822
PfGW456L13_2823 - Flavin reductase-like, FMN-binding, at 3,130,201 to 3,130,863
_2823
PfGW456L13_2824 - BOX elements, at 3,130,876 to 3,132,363
_2824
Group
Condition
PfGW456L13
_2820
PfGW456L13
_2821
PfGW456L13
_2822
PfGW456L13
_2823
PfGW456L13
_2824
carbon source
D-Galactose (C)
-0.1
-1.3
-0.1
-0.8
-0.2
carbon source
L-Malic (C)
-1.0
-0.5
-0.1
-0.2
-0.2
carbon source
a-Ketoglutaric (C)
-0.2
-1.6
-0.1
+0.6
-0.4
stress
Aluminum chloride 5 mM
-0.9
-0.1
-0.1
-0.4
-0.2
carbon source
L-Alanine (C)
-0.9
-0.3
-0.1
+0.0
-0.2
stress
Dimethyl Sulfoxide 7.5 vol%
-0.2
-0.5
-0.1
-0.4
+0.0
carbon source
L-Glutamine (C)
-0.7
-0.5
+0.0
-0.1
-0.0
nitrogen source
L-Proline (N)
-0.3
+0.2
+0.3
-1.0
-0.1
carbon source
D-Lactate (C)
-0.6
-0.6
-0.1
+0.4
+0.0
carbon source
L-Glutamine (C)
+0.1
-0.6
+0.0
-0.5
+0.1
carbon source
D,L-Lactate (C)
-0.8
-0.5
-0.1
+0.3
+0.3
nitrogen source
nitrate (N)
-0.7
-0.4
+0.3
-0.0
+0.1
carbon source
D-Fructose (C)
-0.6
-0.6
-0.1
+0.6
-0.0
stress
Lomefloxacin 0.0004 mM
+0.2
-0.4
-0.3
+0.5
-0.4
nitrogen source
L-Leucine (N)
+0.3
-0.4
+0.2
-0.4
-0.1
carbon source
L-Arabinose (C)
-1.0
+0.7
+0.1
-0.1
+0.1
nitrogen source
L-Citrulline (N)
-0.8
-0.1
+0.2
+0.4
+0.2
nitrogen source
Ammonium chloride (N)
-0.4
+0.5
+0.2
+0.0
-0.1
carbon source
Putrescine (C)
-0.7
-0.1
-0.1
+0.6
+0.5
nitrogen source
Gly-Glu (N)
+0.4
-0.3
+0.2
-0.3
+0.2
nitrogen source
L-Phenylalanine (N)
+0.1
+0.4
+0.2
-0.6
+0.0
carbon source
L-Lactate (C)
+0.6
-0.9
+0.3
+0.5
-0.2
carbon source
D-Glucose (C)
+0.3
-0.8
-0.1
+1.3
-0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.3
+0.8
-0.0
-0.2
-0.0
carbon source
a-Ketoglutaric (C)
-0.3
+0.4
-0.0
+0.7
-0.0
carbon source
octanoate (C)
+0.8
-0.1
-0.5
+0.2
+0.6
carbon source
D-Galactose (C)
+0.6
-0.2
+0.0
+0.6
-0.1
carbon source
L-Arabinose (C)
-0.1
+0.5
+0.1
+0.8
-0.2
carbon source
L-Histidine (C)
+0.6
+0.2
+0.0
+0.4
+0.1
carbon source
D-Gluconic Acid (C)
+0.4
+0.2
+0.1
+0.8
-0.1
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