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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotides
PfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotides
PfGW456L13_277 and PfGW456L13_278 are separated by 13 nucleotides
PfGW456L13_278 and PfGW456L13_279 overlap by 4 nucleotides
PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913
_275
PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556
_276
PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657
_277
PfGW456L13_278 - Type IV pilus biogenesis protein PilP, at 326,671 to 327,198
_278
PfGW456L13_279 - Type IV pilus biogenesis protein PilO, at 327,195 to 327,818
_279
Group
Condition
PfGW456L13
_275
PfGW456L13
_276
PfGW456L13
_277
PfGW456L13
_278
PfGW456L13
_279
nitrogen source
L-Phenylalanine (N)
-4.1
-4.1
+0.1
-0.2
-0.1
carbon source
Glycerol (C)
-4.1
-3.5
-0.0
-0.2
-0.3
nitrogen source
L-Arginine (N)
-3.9
-4.1
+0.1
+0.0
-0.2
carbon source
D-Serine (C)
-3.8
-3.7
+0.1
-0.3
-0.2
carbon source
L-Histidine (C)
-3.9
-3.8
-0.0
-0.2
+0.0
carbon source
L-Histidine (C)
-4.2
-3.6
-0.2
-0.2
+0.3
carbon source
Trisodium citrate (C)
-3.9
-3.4
-0.2
+0.5
-0.7
carbon source
L-Asparagine (C)
-3.9
-3.7
+0.0
+0.0
-0.1
nitrogen source
Glycine (N)
-3.8
-3.9
-0.0
+0.1
-0.1
nitrogen source
NAG (N)
-3.7
-3.9
-0.1
+0.1
-0.1
carbon source
D-Serine (C)
-4.0
-3.4
+0.2
-0.2
-0.2
carbon source
L-Tryptophan (C)
-3.7
-3.6
+0.1
-0.2
+0.1
carbon source
D-Alanine (C)
-4.0
-3.4
+0.1
-0.2
+0.1
carbon source
Tween 20 (C)
-3.7
-3.7
+0.2
-0.1
+0.0
carbon source
L-Malic (C)
-3.6
-3.7
+0.2
-0.5
+0.3
carbon source
D-Gluconic Acid (C)
-3.8
-3.4
+0.1
-0.5
+0.2
carbon source
D-Lactate (C)
-3.8
-3.4
+0.3
+0.1
-0.5
nitrogen source
L-Valine (N)
-3.6
-3.8
+0.1
+0.2
-0.1
carbon source
casaminos (C)
-4.0
-3.4
+0.0
-0.1
+0.3
carbon source
L-Arabinose (C)
-3.8
-3.4
-0.1
-0.2
+0.4
carbon source
L-Valine (C)
-4.0
-3.4
+0.2
+0.1
+0.2
nitrogen source
nitrate (N)
-3.5
-3.7
+0.1
-0.2
+0.4
nitrogen source
L-Tryptophan (N)
-3.6
-3.7
+0.0
+0.3
+0.1
nitrogen source
L-Histidine (N)
-3.5
-3.8
-0.1
+0.1
+0.4
carbon source
succinate (C)
-3.5
-3.6
-0.2
+0.2
+0.5
carbon source
D-Fructose (C)
-3.7
-3.3
+0.1
+0.0
+0.5
carbon source
L-Malic (C)
-3.7
-3.3
+0.1
+0.3
+0.3
carbon source
a-Ketoglutaric (C)
-3.5
-3.4
+0.2
-0.5
+0.9
nitrogen source
D-Serine (N)
-3.4
-3.6
+0.1
+0.3
+0.3
carbon source
Glycerol (C)
-3.5
-3.5
+0.3
+0.3
+0.4
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