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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2684 and PfGW456L13_2685 are separated by 167 nucleotides
PfGW456L13_2685 and PfGW456L13_2686 are separated by 41 nucleotides
PfGW456L13_2686 and PfGW456L13_2687 are separated by 404 nucleotides
PfGW456L13_2687 and PfGW456L13_2688 are separated by 68 nucleotides
PfGW456L13_2684 - Lipoate synthase, at 2,982,879 to 2,983,868
_2684
PfGW456L13_2685 - Glycine hydroxymethyltransferase (EC 2.1.2.1)
(from data)
, at 2,984,036 to 2,985,292
_2685
PfGW456L13_2686 - Glycine cleavage system H protein, at 2,985,334 to 2,985,717
_2686
PfGW456L13_2687 - transcriptional regulator, MerR family, at 2,986,122 to 2,987,630
_2687
PfGW456L13_2688 - Transcriptional regulator, LysR family, at 2,987,699 to 2,988,613
_2688
Group
Condition
PfGW456L13
_2684
PfGW456L13
_2685
PfGW456L13
_2686
PfGW456L13
_2687
PfGW456L13
_2688
control
LB control
-0.6
-0.3
-1.0
-0.2
-0.2
carbon source
L-Glutamine (C)
-0.3
-0.1
-1.1
-0.3
+0.0
carbon source
D-Alanine (C)
-0.2
-0.0
-0.4
-0.6
-0.2
carbon source
Trisodium citrate (C)
-0.6
+0.0
-0.5
-0.3
+0.1
stress
Aluminum chloride 2.5 mM
-0.3
-0.1
-0.8
-0.1
-0.0
nitrogen source
Glycine (N)
+0.2
-1.4
+0.2
-0.3
-0.1
carbon source
L-Arabinose (C)
-0.4
-0.3
-0.2
-0.5
+0.2
carbon source
L-Asparagine (C)
-0.4
-0.2
-0.3
-0.2
-0.0
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.5
-0.2
-0.3
-0.3
+0.2
carbon source
Putrescine (C)
-0.3
-0.3
+0.2
-0.6
-0.0
control
LB control
-0.3
+0.1
-0.5
-0.3
-0.1
carbon source
D-Lactate (C)
-0.3
-0.1
-0.7
+0.2
+0.1
carbon source
D-Lactate (C)
-0.5
-0.0
+0.6
-0.6
-0.1
nitrogen source
Cytosine (N)
+0.2
-0.1
-0.6
-0.2
+0.2
carbon source
L-Glutamine (C)
+0.2
+0.1
-0.8
-0.2
+0.1
carbon source
D-Glucose (C)
+0.0
+0.1
+0.5
-0.6
-0.3
carbon source
octanoate (C)
-0.2
-0.8
+0.8
-0.4
+0.3
control
LB control
-0.2
+0.2
-0.3
+0.3
-0.2
carbon source
a-Ketoglutaric (C)
-0.7
-0.2
+0.6
-0.0
+0.3
carbon source
D-Serine (C)
-0.5
+0.0
+0.6
-0.0
-0.1
nitrogen source
Gly-DL-Asp (N)
+0.3
+0.2
-0.5
+0.1
+0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.4
-0.1
+0.8
-0.0
+0.0
carbon source
L-Tryptophan (C)
-0.3
-0.2
+0.7
+0.1
+0.2
carbon source
L-Lactate (C)
+0.2
+0.1
+0.8
-0.1
-0.6
control
LB
-0.3
+0.3
+0.5
+0.1
-0.1
carbon source
Glycerol (C)
-0.2
-0.2
+0.7
+0.1
+0.2
stress
Vancomycin 0.5 mg/ml
-0.2
-0.1
+0.7
+0.1
+0.1
carbon source
L-Tryptophan (C)
+0.1
-0.1
+0.7
-0.1
+0.2
carbon source
Glycerol (C)
+0.8
-0.0
+0.3
+0.1
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.7
+0.2
+0.5
+0.3
+0.0
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