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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2667 and PfGW456L13_2668 are separated by 146 nucleotides
PfGW456L13_2668 and PfGW456L13_2669 are separated by 66 nucleotides
PfGW456L13_2669 and PfGW456L13_2670 are separated by 168 nucleotides
PfGW456L13_2670 and PfGW456L13_2671 are separated by 137 nucleotides
PfGW456L13_2667 - probable acetyltransferase, at 2,965,589 to 2,966,014
_2667
PfGW456L13_2668 - FIG00962160: hypothetical protein, at 2,966,161 to 2,966,598
_2668
PfGW456L13_2669 - GDP-mannose pyrophosphatase YffH, at 2,966,665 to 2,967,258
_2669
PfGW456L13_2670 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 2,967,427 to 2,967,942
_2670
PfGW456L13_2671 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 2,968,080 to 2,969,807
_2671
Group
Condition
PfGW456L13
_2667
PfGW456L13
_2668
PfGW456L13
_2669
PfGW456L13
_2670
PfGW456L13
_2671
carbon source
L-Alanine (C)
-0.0
-0.0
-0.1
-1.5
+0.0
nitrogen source
nitrate (N)
-0.2
-0.1
-0.2
-1.0
+0.1
control
LB control
+0.0
-0.2
-0.1
-0.9
-0.1
carbon source
D-Fructose (C)
+0.2
-0.1
+0.3
-1.6
-0.1
carbon source
L-Glutamine (C)
-0.2
-0.0
-0.3
-0.5
+0.0
carbon source
L-Tryptophan (C)
+0.1
+0.0
+0.2
-1.1
-0.0
nitrogen source
Ammonium chloride (N)
+0.0
-0.4
-0.2
-0.4
+0.1
nitrogen source
L-Threonine (N)
-0.1
-0.3
+0.1
-0.6
+0.0
nitrogen source
L-Lysine (N)
-0.1
-0.3
+0.1
-0.5
+0.0
carbon source
L-Histidine (C)
-0.3
+0.1
-0.3
-0.3
+0.1
carbon source
D-Galactose (C)
-0.2
+0.2
+0.4
-1.2
+0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.3
+0.3
-0.1
-0.4
-0.1
carbon source
D-Lactate (C)
+0.0
+0.2
+0.0
-1.2
+0.3
carbon source
a-Ketoglutaric (C)
-0.6
-0.2
+0.0
+0.4
-0.0
stress
Zinc 1 mM
+0.2
-0.1
+0.2
-0.6
-0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.3
-0.1
-0.1
-0.6
+0.0
carbon source
L-Malic (C)
-0.3
+0.3
+0.2
-0.4
-0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.4
-0.1
-0.5
+0.1
stress
Lomefloxacin 0.0004 mM
-0.0
-0.2
-0.3
+0.7
-0.0
nitrogen source
Cytosine (N)
-0.1
-0.2
+0.4
+0.3
+0.0
stress
Aluminum chloride 5 mM
-0.4
+0.0
-0.1
+1.0
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-0.2
+0.3
+0.3
carbon source
succinate (C)
+0.3
+0.4
+0.3
-0.4
+0.0
carbon source
octanoate (C)
+0.6
+0.4
+0.6
-1.1
+0.2
carbon source
D-Glucose (C)
-0.1
+0.4
+0.1
+0.4
-0.1
carbon source
L-Lactate (C)
+0.5
+0.6
+0.1
-0.2
-0.0
stress
Fusidic 0.08 mg/ml
+0.2
-0.0
+0.4
+0.4
-0.0
carbon source
L-Arabinose (C)
+0.3
+0.0
-0.0
+0.7
-0.0
stress
D-Cycloserine 0.125 mg/ml
-0.0
+0.1
-0.0
+1.1
+0.0
carbon source
L-Tryptophan (C)
+0.1
+0.6
+0.3
+0.2
+0.0
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