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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_2599 and PfGW456L13_2600 are separated by 257 nucleotides
PfGW456L13_2600 and PfGW456L13_2601 are separated by 78 nucleotides
PfGW456L13_2601 and PfGW456L13_2602 are separated by 29 nucleotides
PfGW456L13_2602 and PfGW456L13_2603 are separated by 237 nucleotides
PfGW456L13_2599 - Exodeoxyribonuclease III (EC 3.1.11.2), at 2,888,082 to 2,888,894
_2599
PfGW456L13_2600 - Histone acetyltransferase HPA2 and related acetyltransferases, at 2,889,152 to 2,889,802
_2600
PfGW456L13_2601 - Uncharacterized protein YtfM precursor, at 2,889,881 to 2,891,608
_2601
PfGW456L13_2602 - putative exported protein, at 2,891,638 to 2,895,276
_2602
PfGW456L13_2603 - Transcriptional regulator, MarR family, at 2,895,514 to 2,895,987
_2603
Group
Condition
PfGW456L13
_2599
PfGW456L13
_2600
PfGW456L13
_2601
PfGW456L13
_2602
PfGW456L13
_2603
carbon source
Trisodium citrate (C)
-1.9
-1.1
-3.4
-4.2
+0.5
stress
Vancomycin 0.5 mg/ml
+0.1
-0.1
-1.6
-2.0
-1.3
carbon source
a-Ketoglutaric (C)
-0.4
-0.2
+0.1
-0.1
-4.1
carbon source
D-Mannose (C)
-0.3
-0.2
-1.6
-1.5
-0.3
carbon source
D-Mannose (C)
+0.6
-0.2
-1.6
-2.0
+0.3
carbon source
D-Lactate (C)
+0.8
+0.0
+0.3
+0.4
-4.3
carbon source
L-Histidine (C)
-0.0
+0.0
-1.2
-1.2
-0.2
carbon source
D-Gluconic Acid (C)
-0.4
-0.2
-0.0
-0.4
-1.3
stress
Aluminum chloride 5 mM
-0.5
-0.3
-0.5
-0.8
-0.0
carbon source
Putrescine (C)
-0.0
+0.2
-0.0
-0.6
-1.6
carbon source
Tween 20 (C)
-0.2
+0.1
-1.1
-1.1
+0.4
carbon source
Tween 20 (C)
+0.7
-0.3
-1.4
-1.5
+0.9
carbon source
D-Glucose (C)
+0.2
-0.6
-0.0
-0.1
-0.8
nitrogen source
L-Valine (N)
+0.2
+0.1
-0.7
-0.7
-0.2
stress
Chloride 400 mM
-0.0
+0.2
-0.7
-0.8
+0.4
carbon source
L-Alanine (C)
+0.5
-0.1
-0.7
-0.6
-0.0
carbon source
L-Histidine (C)
+0.4
-0.6
-0.4
-0.5
+0.2
stress
Vancomycin 0.25 mg/ml
+0.6
+0.2
-0.5
-0.4
-0.9
carbon source
L-Alanine (C)
+0.4
-0.1
-0.8
-0.8
+0.6
carbon source
succinate (C)
+0.3
+0.3
-0.3
-0.2
-0.9
carbon source
D-Fructose (C)
-0.4
+0.3
-0.3
-0.5
+0.3
stress
Aluminum chloride 2.5 mM
-0.1
-0.3
+0.4
+0.3
-0.8
carbon source
L-Phenylalanine (C)
+0.7
-0.0
-0.4
-0.5
-0.2
carbon source
L-Asparagine (C)
+0.5
-0.4
-0.5
-0.4
+0.6
stress
Lomefloxacin 0.0004 mM
+0.1
-0.3
+0.8
+0.9
-1.3
carbon source
D-Alanine (C)
+0.5
-0.1
-0.5
-0.4
+0.8
carbon source
L-Arabinose (C)
+0.3
-0.4
-0.0
+0.1
+1.0
nitrogen source
L-Proline (N)
+0.2
+0.3
+0.7
+0.8
-0.5
stress
Bacitracin 1 mg/ml
+0.6
+0.1
+0.8
+0.6
-0.4
carbon source
octanoate (C)
+0.7
+1.5
+3.5
+3.2
+0.3
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