Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_2553 and PfGW456L13_2554 are separated by 250 nucleotidesPfGW456L13_2554 and PfGW456L13_2555 are separated by 149 nucleotidesPfGW456L13_2555 and PfGW456L13_2556 are separated by 235 nucleotidesPfGW456L13_2556 and PfGW456L13_2557 are separated by 203 nucleotides PfGW456L13_2553 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,821,010 to 2,822,293 _2553 PfGW456L13_2554 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,822,544 to 2,824,940 _2554 PfGW456L13_2555 - DNA-binding protein HU-beta, at 2,825,090 to 2,825,362 _2555 PfGW456L13_2556 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 2,825,598 to 2,827,469 _2556 PfGW456L13_2557 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 2,827,673 to 2,828,536 _2557
Group Condition PfGW456L13_2553 PfGW456L13_2554 PfGW456L13_2555 PfGW456L13_2556 PfGW456L13_2557
carbon source Trisodium citrate (C) -2.0 -2.1 N.D. -3.3 +0.0
carbon source Putrescine (C) -3.3 -1.9 N.D. -1.8 -0.2
carbon source D-Alanine (C) -3.1 -1.1 N.D. -2.6 -0.0
stress nitrate 200 mM -1.9 -2.4 N.D. -2.2 +0.0
carbon source D-Galactose (C) -4.3 -0.8 N.D. -1.2 +0.1
carbon source L-Malic (C) -1.6 -0.4 N.D. -3.7 -0.3
carbon source D-Alanine (C) -3.4 -1.2 N.D. -1.1 -0.2
carbon source Glycerol (C) -2.4 -0.5 N.D. -1.7 -0.1
carbon source L-Arabinose (C) -2.0 -0.9 N.D. -2.1 +0.2
carbon source L-Arabinose (C) -3.2 -0.7 N.D. -0.9 +0.0
carbon source L-Tryptophan (C) -1.7 -1.1 N.D. -1.7 -0.2
carbon source octanoate (C) -1.1 -2.1 N.D. -1.5 +0.1
carbon source L-Alanine (C) -1.9 -0.8 N.D. -1.9 +0.1
carbon source D-Gluconic Acid (C) -1.4 -0.5 N.D. -2.1 -0.2
carbon source D-Fructose (C) -1.7 -0.8 N.D. -1.2 -0.3
nitrogen source L-Lysine (N) -1.8 -0.7 N.D. -1.5 +0.1
carbon source L-Malic (C) -2.0 -0.9 N.D. -1.0 -0.1
carbon source L-Alanine (C) -1.6 -0.7 N.D. -1.7 +0.1
carbon source casaminos (C) -1.1 -0.6 N.D. -1.9 -0.1
carbon source L-Asparagine (C) -0.9 -0.4 N.D. -2.5 +0.1
nitrogen source D-Alanine (N) -1.8 -0.9 N.D. -1.2 +0.1
nitrogen source NAG (N) -2.7 -0.4 N.D. -0.4 +0.0
carbon source D-Mannose (C) -1.6 +0.6 N.D. -2.5 +0.2
carbon source D-Serine (C) -2.4 -0.3 N.D. -0.8 +0.3
carbon source L-Phenylalanine (C) -2.4 +1.1 N.D. -1.8 -0.1
carbon source D-Fructose (C) -1.6 -0.4 N.D. -1.4 +0.3
carbon source L-Phenylalanine (C) -2.9 +1.5 N.D. -1.3 -0.0
nitrogen source D-Serine (N) -2.8 -0.3 N.D. +0.1 +0.6
stress Vancomycin 0.5 mg/ml -0.7 -2.0 N.D. -1.4 +2.4
stress Vancomycin 0.25 mg/ml -0.5 -1.4 N.D. -0.8 +1.3
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