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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_2501 and PfGW456L13_2502 are separated by 13 nucleotides
PfGW456L13_2502 and PfGW456L13_2503 are separated by 273 nucleotides
PfGW456L13_2503 and PfGW456L13_2504 overlap by 4 nucleotides
PfGW456L13_2504 and PfGW456L13_2505 are separated by 18 nucleotides
PfGW456L13_2501 - hypothetical protein, at 2,766,673 to 2,767,167
_2501
PfGW456L13_2502 - Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-), at 2,767,181 to 2,767,957
_2502
PfGW456L13_2503 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 2,768,231 to 2,769,058
_2503
PfGW456L13_2504 - 4-oxalocrotonate decarboxylase (EC 4.1.1.77), at 2,769,055 to 2,769,846
_2504
PfGW456L13_2505 - Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol, at 2,769,865 to 2,770,773
_2505
Group
Condition
PfGW456L13
_2501
PfGW456L13
_2502
PfGW456L13
_2503
PfGW456L13
_2504
PfGW456L13
_2505
carbon source
a-Ketoglutaric (C)
-0.5
-1.3
-0.0
-0.9
-0.2
carbon source
D-Lactate (C)
+0.1
-0.3
+0.1
-1.2
-0.6
carbon source
D-Glucose (C)
-0.2
-0.2
-0.3
-0.1
-1.0
nitrogen source
L-Asparagine (N)
+0.1
-0.4
+0.2
-0.9
-0.3
nitrogen source
L-Phenylalanine (N)
-0.2
-0.1
+0.2
-0.2
-0.8
nitrogen source
L-Valine (N)
-0.1
-0.4
+0.3
-0.7
-0.1
nitrogen source
L-Tryptophan (N)
+0.1
-0.5
+0.2
-0.6
-0.0
carbon source
L-Glutamine (C)
-0.0
+0.3
-0.6
-0.1
-0.4
carbon source
D-Gluconic Acid (C)
-0.0
-0.3
+0.3
+0.3
-0.9
carbon source
D-Galactose (C)
+0.1
-0.1
+0.3
-0.8
-0.1
carbon source
L-Phenylalanine (C)
+0.1
+0.4
-0.1
-0.4
-0.5
carbon source
L-Lactate (C)
-0.1
-0.3
+0.5
-0.2
-0.4
stress
Lomefloxacin 0.0004 mM
+0.2
+0.6
-0.3
-0.4
-0.4
carbon source
L-Malic (C)
+0.3
+0.2
+0.1
-0.6
-0.5
nitrogen source
L-Arginine (N)
+0.3
-0.3
+0.3
-0.3
-0.2
stress
Vancomycin 0.5 mg/ml
+0.2
+0.2
+0.0
-1.0
+0.4
stress
Fusidic 0.08 mg/ml
+0.3
+0.2
-0.5
-0.1
+0.5
carbon source
octanoate (C)
-0.2
+0.4
-0.3
+0.5
+0.1
nitrogen source
L-Glutamine (N)
+0.4
-0.3
+0.2
-0.3
+0.7
carbon source
D-Fructose (C)
+0.2
+0.1
+0.2
+0.7
-0.6
carbon source
D-Lactate (C)
+0.1
+0.3
+0.2
+0.7
-0.5
carbon source
L-Asparagine (C)
+0.2
+0.4
-0.2
+0.6
-0.3
carbon source
Glycerol (C)
-0.0
+0.2
+0.2
+0.7
-0.5
carbon source
D-Gluconic Acid (C)
+0.3
+1.0
-0.1
-0.2
-0.3
carbon source
L-Histidine (C)
+0.2
+0.5
-0.0
+0.5
-0.3
stress
Vancomycin 0.25 mg/ml
+0.3
+0.0
+0.0
-0.3
+0.8
carbon source
L-Tryptophan (C)
+0.0
+0.3
+0.0
+1.0
-0.1
carbon source
L-Alanine (C)
+0.1
+0.4
+0.2
+0.8
-0.1
stress
Cephalothin 3 mg/ml
+0.6
+0.6
+0.2
-0.1
+0.6
carbon source
L-Arabinose (C)
+0.2
+0.8
+0.4
+1.7
-0.2
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