Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_2501 and PfGW456L13_2502 are separated by 13 nucleotidesPfGW456L13_2502 and PfGW456L13_2503 are separated by 273 nucleotidesPfGW456L13_2503 and PfGW456L13_2504 overlap by 4 nucleotidesPfGW456L13_2504 and PfGW456L13_2505 are separated by 18 nucleotides PfGW456L13_2501 - hypothetical protein, at 2,766,673 to 2,767,167 _2501 PfGW456L13_2502 - Probable short-chain type dehydrogenase/reductase (EC 1.-.-.-), at 2,767,181 to 2,767,957 _2502 PfGW456L13_2503 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 2,768,231 to 2,769,058 _2503 PfGW456L13_2504 - 4-oxalocrotonate decarboxylase (EC 4.1.1.77), at 2,769,055 to 2,769,846 _2504 PfGW456L13_2505 - Acetaldehyde dehydrogenase, acetylating, (EC 1.2.1.10) in gene cluster for degradation of phenols, cresols, catechol, at 2,769,865 to 2,770,773 _2505
Group Condition PfGW456L13_2501 PfGW456L13_2502 PfGW456L13_2503 PfGW456L13_2504 PfGW456L13_2505
carbon source a-Ketoglutaric (C) -0.5 -1.3 -0.0 -0.9 -0.2
carbon source D-Lactate (C) +0.1 -0.3 +0.1 -1.2 -0.6
carbon source D-Glucose (C) -0.2 -0.2 -0.3 -0.1 -1.0
nitrogen source L-Asparagine (N) +0.1 -0.4 +0.2 -0.9 -0.3
nitrogen source L-Phenylalanine (N) -0.2 -0.1 +0.2 -0.2 -0.8
nitrogen source L-Valine (N) -0.1 -0.4 +0.3 -0.7 -0.1
nitrogen source L-Tryptophan (N) +0.1 -0.5 +0.2 -0.6 -0.0
carbon source L-Glutamine (C) -0.0 +0.3 -0.6 -0.1 -0.4
carbon source D-Gluconic Acid (C) -0.0 -0.3 +0.3 +0.3 -0.9
carbon source D-Galactose (C) +0.1 -0.1 +0.3 -0.8 -0.1
carbon source L-Phenylalanine (C) +0.1 +0.4 -0.1 -0.4 -0.5
carbon source L-Lactate (C) -0.1 -0.3 +0.5 -0.2 -0.4
stress Lomefloxacin 0.0004 mM +0.2 +0.6 -0.3 -0.4 -0.4
carbon source L-Malic (C) +0.3 +0.2 +0.1 -0.6 -0.5
nitrogen source L-Arginine (N) +0.3 -0.3 +0.3 -0.3 -0.2
stress Vancomycin 0.5 mg/ml +0.2 +0.2 +0.0 -1.0 +0.4
stress Fusidic 0.08 mg/ml +0.3 +0.2 -0.5 -0.1 +0.5
carbon source octanoate (C) -0.2 +0.4 -0.3 +0.5 +0.1
nitrogen source L-Glutamine (N) +0.4 -0.3 +0.2 -0.3 +0.7
carbon source D-Fructose (C) +0.2 +0.1 +0.2 +0.7 -0.6
carbon source D-Lactate (C) +0.1 +0.3 +0.2 +0.7 -0.5
carbon source L-Asparagine (C) +0.2 +0.4 -0.2 +0.6 -0.3
carbon source Glycerol (C) -0.0 +0.2 +0.2 +0.7 -0.5
carbon source D-Gluconic Acid (C) +0.3 +1.0 -0.1 -0.2 -0.3
carbon source L-Histidine (C) +0.2 +0.5 -0.0 +0.5 -0.3
stress Vancomycin 0.25 mg/ml +0.3 +0.0 +0.0 -0.3 +0.8
carbon source L-Tryptophan (C) +0.0 +0.3 +0.0 +1.0 -0.1
carbon source L-Alanine (C) +0.1 +0.4 +0.2 +0.8 -0.1
stress Cephalothin 3 mg/ml +0.6 +0.6 +0.2 -0.1 +0.6
carbon source L-Arabinose (C) +0.2 +0.8 +0.4 +1.7 -0.2
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