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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2411 and PfGW456L13_2412 overlap by 4 nucleotides
PfGW456L13_2412 and PfGW456L13_2413 are separated by 218 nucleotides
PfGW456L13_2413 and PfGW456L13_2414 are separated by 39 nucleotides
PfGW456L13_2414 and PfGW456L13_2415 are separated by 53 nucleotides
PfGW456L13_2411 - Acetyl-CoA C-acetyltransferase (EC 2.3.1.9)
(from data)
, at 2,674,550 to 2,675,731
_2411
PfGW456L13_2412 - Enoyl-CoA hydratase (EC 4.2.1.17), at 2,675,728 to 2,676,510
_2412
PfGW456L13_2413 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 2,676,729 to 2,677,835
_2413
PfGW456L13_2414 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 2,677,875 to 2,679,293
_2414
PfGW456L13_2415 - transcriptional regulator, LuxR family, at 2,679,347 to 2,680,198
_2415
Group
Condition
PfGW456L13
_2411
PfGW456L13
_2412
PfGW456L13
_2413
PfGW456L13
_2414
PfGW456L13
_2415
nitrogen source
L-Lysine (N)
-1.5
-0.5
-0.0
+0.2
+0.0
carbon source
a-Ketoglutaric (C)
+0.1
-0.6
-0.1
-0.6
-0.2
carbon source
D,L-Lactate (C)
-0.4
-0.4
-0.3
-0.1
-0.0
carbon source
octanoate (C)
-1.2
-0.3
+0.2
+0.3
-0.1
carbon source
L-Phenylalanine (C)
-0.9
-0.2
-0.0
+0.0
+0.1
carbon source
Trisodium citrate (C)
+0.1
-0.4
-0.2
-0.4
-0.1
carbon source
L-Histidine (C)
-0.1
-0.6
-0.1
-0.0
+0.0
carbon source
D-Alanine (C)
+0.1
-0.6
-0.0
-0.2
-0.0
stress
Vancomycin 0.5 mg/ml
-0.2
-0.3
-0.0
-0.2
-0.1
carbon source
L-Phenylalanine (C)
-0.6
-0.1
+0.1
-0.1
-0.0
carbon source
D-Galactose (C)
-0.1
-0.4
-0.2
-0.0
-0.0
carbon source
L-Arabinose (C)
-0.2
-0.2
-0.1
-0.2
+0.2
carbon source
succinate (C)
-0.2
-0.2
-0.2
-0.2
+0.1
control
LB control
+0.0
-0.6
+0.1
-0.1
+0.0
carbon source
L-Lactate (C)
+0.1
-0.5
-0.0
-0.0
-0.1
carbon source
D-Gluconic Acid (C)
+0.0
-0.3
-0.2
-0.1
+0.1
nitrogen source
L-Serine (N)
-0.3
-0.2
-0.2
+0.1
+0.1
lb
LB
+0.2
-0.5
+0.0
-0.0
-0.1
carbon source
D-Lactate (C)
-0.2
+0.1
-0.4
+0.0
+0.1
stress
Paraquat dichloride 0.032 mg/ml
-0.2
-0.2
+0.2
-0.2
+0.0
stress
Dimethyl Sulfoxide 7.5 vol%
-0.3
+0.3
-0.2
-0.1
-0.1
carbon source
D-Galactose (C)
-0.8
+0.3
-0.0
+0.0
+0.3
stress
Lomefloxacin 0.0004 mM
-0.3
-0.2
-0.2
+0.4
+0.1
carbon source
Putrescine (C)
-0.3
+0.3
-0.1
-0.1
+0.2
carbon source
D-Fructose (C)
+0.2
-0.2
-0.0
-0.1
+0.2
stress
Aluminum chloride 5 mM
-0.0
-0.3
+0.2
+0.2
+0.1
carbon source
L-Valine (C)
-0.3
+0.3
-0.1
+0.1
+0.2
carbon source
L-Malic (C)
+0.1
+0.1
+0.3
-0.2
-0.1
stress
Chloride 400 mM
+0.1
-0.1
+0.1
+0.2
+0.2
carbon source
Glycerol (C)
+0.1
+0.4
+0.1
-0.1
+0.3
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