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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2367 and PfGW456L13_2368 are separated by 285 nucleotides
PfGW456L13_2368 and PfGW456L13_2369 are separated by 89 nucleotides
PfGW456L13_2369 and PfGW456L13_2370 are separated by 38 nucleotides
PfGW456L13_2370 and PfGW456L13_2371 are separated by 11 nucleotides
PfGW456L13_2367 - Aha1 domain superfamily, at 2,602,428 to 2,602,916
_2367
PfGW456L13_2368 - ThiJ/PfpI family protein, at 2,603,202 to 2,603,888
_2368
PfGW456L13_2369 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 2,603,978 to 2,604,961
_2369
PfGW456L13_2370 - hypothetical protein, at 2,605,000 to 2,605,632
_2370
PfGW456L13_2371 - hypothetical protein, at 2,605,644 to 2,606,033
_2371
Group
Condition
PfGW456L13
_2367
PfGW456L13
_2368
PfGW456L13
_2369
PfGW456L13
_2370
PfGW456L13
_2371
carbon source
L-Arabinose (C)
-0.0
-0.2
-0.5
-0.1
-1.9
carbon source
D-Fructose (C)
-0.0
+0.3
-1.9
-0.0
-0.2
carbon source
D-Alanine (C)
-0.1
-0.2
-0.5
+0.1
-0.7
stress
Lomefloxacin 0.0004 mM
-0.3
-0.4
-0.4
-0.1
-0.1
carbon source
Glycerol (C)
-0.5
-0.0
+0.6
-0.3
-0.5
carbon source
Putrescine (C)
-0.2
+0.5
-0.8
-0.0
-0.1
carbon source
L-Tryptophan (C)
-0.3
-0.2
+0.5
+0.1
-0.6
carbon source
L-Arabinose (C)
-0.2
-0.5
+0.2
-0.3
+0.4
stress
Bacitracin 0.5 mg/ml
-0.2
-0.0
-0.6
-0.0
+0.5
stress
D-Cycloserine 0.125 mg/ml
-0.2
-0.1
-0.5
+0.1
+0.5
stress
Vancomycin 0.5 mg/ml
-0.2
-0.1
-0.3
-0.1
+0.6
nitrogen source
L-Asparagine (N)
-0.0
-0.6
+0.4
-0.2
+0.5
carbon source
L-Lactate (C)
+0.0
+0.1
-0.4
-0.2
+0.6
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.3
+0.4
-0.3
+0.3
carbon source
L-Malic (C)
+0.2
-0.3
-0.1
-0.2
+0.5
nitrogen source
L-Threonine (N)
-0.2
-0.1
+0.6
-0.2
+0.2
carbon source
L-Tryptophan (C)
+0.2
-0.3
+0.4
-0.2
+0.3
nitrogen source
Ammonium chloride (N)
+0.1
-0.5
+0.6
-0.0
+0.4
carbon source
D-Lactate (C)
+0.2
-0.2
+0.0
-0.1
+0.7
carbon source
D-Gluconic Acid (C)
-0.4
+0.3
+0.6
-0.2
+0.4
nitrogen source
L-Arginine (N)
+0.3
-0.2
+0.6
-0.1
+0.1
stress
Aluminum chloride 5 mM
-0.3
+0.3
+0.3
+0.1
+0.2
nitrogen source
nitrate (N)
+0.0
-0.3
+0.6
-0.0
+0.4
nitrogen source
L-Lysine (N)
+0.4
-0.2
+0.5
-0.2
+0.1
stress
Dimethyl Sulfoxide 7.5 vol%
-0.1
-0.2
+0.4
+0.1
+0.7
carbon source
Tween 20 (C)
-0.1
-0.1
+0.4
+0.0
+0.6
carbon source
a-Ketoglutaric (C)
+0.0
-0.2
+1.2
-0.2
+0.4
nitrogen source
L-Phenylalanine (N)
+0.3
-0.0
+0.8
+0.0
+0.4
carbon source
octanoate (C)
-0.2
+0.3
+0.8
-0.2
+1.0
carbon source
D-Glucose (C)
-0.0
+0.2
+0.8
+0.2
+0.8
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