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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2355 and PfGW456L13_2356 overlap by 1 nucleotides
PfGW456L13_2356 and PfGW456L13_2357 overlap by 11 nucleotides
PfGW456L13_2357 and PfGW456L13_2358 overlap by 4 nucleotides
PfGW456L13_2358 and PfGW456L13_2359 are separated by 142 nucleotides
PfGW456L13_2355 - sigma-54 dependent transcriptional regulator, at 2,587,710 to 2,589,635
_2355
PfGW456L13_2356 - Lipid A export ATP-binding/permease protein MsbA, at 2,589,635 to 2,591,353
_2356
PfGW456L13_2357 - Extracellular protease, at 2,591,343 to 2,592,020
_2357
PfGW456L13_2358 - Probable alkylhalidase homolog (EC 3.8.1.1), at 2,592,017 to 2,593,315
_2358
PfGW456L13_2359 - Acyltransferase, at 2,593,458 to 2,594,408
_2359
Group
Condition
PfGW456L13
_2355
PfGW456L13
_2356
PfGW456L13
_2357
PfGW456L13
_2358
PfGW456L13
_2359
carbon source
D-Fructose (C)
-0.1
-0.4
-1.5
-0.3
+0.0
carbon source
a-Ketoglutaric (C)
-0.3
-0.5
-1.3
+0.2
-0.0
carbon source
L-Arabinose (C)
-0.4
-0.2
-0.7
-0.3
-0.1
carbon source
succinate (C)
-0.1
-1.0
-0.5
-0.2
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
-0.4
-0.3
-0.3
+0.1
carbon source
L-Glutamine (C)
+0.2
-0.9
+0.1
+0.1
-0.1
carbon source
D-Galactose (C)
+0.3
-0.9
+0.4
-0.4
-0.0
carbon source
Glycerol (C)
+0.1
-0.1
-0.6
-0.2
+0.3
carbon source
L-Malic (C)
+0.1
+0.5
-1.3
+0.1
+0.1
carbon source
Glycerol (C)
+0.5
-0.8
-0.3
+0.2
-0.1
nitrogen source
L-Phenylalanine (N)
+0.3
-0.3
-0.3
-0.2
+0.1
carbon source
L-Malic (C)
+0.4
-0.7
-0.1
-0.1
-0.0
carbon source
D,L-Lactate (C)
+0.3
+0.4
-0.8
-0.1
+0.0
stress
Lomefloxacin 0.0004 mM
-0.0
+0.9
-0.9
-0.2
+0.0
stress
Vancomycin 0.5 mg/ml
-0.1
+0.3
-0.6
+0.2
+0.0
carbon source
L-Lactate (C)
+0.3
-0.3
-0.5
+0.0
+0.3
carbon source
Putrescine (C)
+0.6
-0.3
-0.6
+0.2
-0.0
nitrogen source
NAG (N)
+0.1
-0.3
+0.6
-0.3
-0.0
carbon source
D-Fructose (C)
-0.5
+0.2
-0.0
+0.5
+0.1
carbon source
L-Glutamine (C)
+0.2
+0.5
-0.4
-0.0
-0.1
carbon source
D-Lactate (C)
-0.5
+0.3
+0.5
-0.1
+0.2
carbon source
D-Glucose (C)
+0.5
-0.1
+0.2
+0.3
-0.3
carbon source
L-Tryptophan (C)
+0.1
+0.2
+0.8
-0.2
+0.1
carbon source
D-Serine (C)
-0.2
+0.0
+0.7
+0.2
+0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
-0.3
+0.3
+0.8
-0.1
+0.2
nitrogen source
L-Arginine (N)
+0.2
+0.2
+0.6
-0.1
+0.1
carbon source
a-Ketoglutaric (C)
+0.4
+0.3
-0.1
+0.2
+0.2
nitrogen source
Ammonium chloride (N)
+0.3
+0.5
+0.5
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.0
+0.7
+1.2
-0.0
-0.1
carbon source
octanoate (C)
+0.4
+0.3
+0.9
+0.7
-0.2
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