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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_227 and PfGW456L13_228 are separated by 401 nucleotides
PfGW456L13_228 and PfGW456L13_229 are separated by 180 nucleotides
PfGW456L13_229 and PfGW456L13_230 are separated by 34 nucleotides
PfGW456L13_230 and PfGW456L13_231 are separated by 48 nucleotides
PfGW456L13_227 - FIG00958420: hypothetical protein, at 268,972 to 269,202
_227
PfGW456L13_228 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 269,604 to 271,214
_228
PfGW456L13_229 - Na(+)/H(+) antiporter, at 271,395 to 273,137
_229
PfGW456L13_230 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 273,172 to 276,540
_230
PfGW456L13_231 - Selenoprotein O and cysteine-containing homologs, at 276,589 to 278,052
_231
Group
Condition
PfGW456L13
_227
PfGW456L13
_228
PfGW456L13
_229
PfGW456L13
_230
PfGW456L13
_231
carbon source
octanoate (C)
N.D.
-0.1
-2.2
-0.3
-0.1
carbon source
L-Alanine (C)
N.D.
-0.2
-1.0
-0.1
-0.1
carbon source
L-Alanine (C)
N.D.
-0.2
-0.8
-0.1
+0.1
carbon source
L-Phenylalanine (C)
N.D.
+0.1
-0.9
+0.1
-0.1
stress
Aluminum chloride 5 mM
N.D.
-0.2
-0.2
-0.3
-0.1
carbon source
a-Ketoglutaric (C)
N.D.
+0.0
-0.4
+0.0
-0.3
carbon source
D-Serine (C)
N.D.
+0.0
-0.5
-0.1
-0.1
nitrogen source
L-Arginine (N)
N.D.
-0.1
-0.5
+0.0
+0.0
carbon source
D-Fructose (C)
N.D.
-0.2
-0.5
+0.1
-0.1
carbon source
D-Serine (C)
N.D.
-0.2
-0.4
-0.1
+0.0
nitrogen source
D-Serine (N)
N.D.
+0.0
-0.7
+0.1
+0.0
carbon source
L-Phenylalanine (C)
N.D.
-0.1
-0.6
-0.0
+0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.3
-0.3
+0.1
-0.1
control
LB control
N.D.
+0.0
-0.5
-0.0
+0.0
carbon source
L-Valine (C)
N.D.
-0.3
+0.2
-0.1
-0.1
stress
Aluminum chloride 2.5 mM
N.D.
+0.1
-0.1
-0.4
+0.1
nitrogen source
L-Serine (N)
N.D.
-0.1
-0.3
+0.2
+0.1
control
LB control
N.D.
+0.2
-0.5
+0.1
-0.0
carbon source
D-Lactate (C)
N.D.
+0.1
+0.2
-0.1
-0.3
control
LB control
N.D.
+0.0
-0.4
+0.1
+0.1
carbon source
D-Mannose (C)
N.D.
-0.1
-0.4
+0.3
+0.1
carbon source
Trisodium citrate (C)
N.D.
-0.6
+0.5
+0.1
-0.1
carbon source
L-Lactate (C)
N.D.
-0.5
+0.4
+0.3
-0.2
carbon source
Glycerol (C)
N.D.
-0.0
-0.4
+0.1
+0.3
control
LB control
N.D.
+0.1
-0.3
+0.2
+0.1
carbon source
a-Ketoglutaric (C)
N.D.
-0.2
-0.1
-0.0
+0.4
carbon source
L-Valine (C)
N.D.
-0.1
+0.4
+0.1
-0.2
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
N.D.
+0.1
+0.4
+0.2
-0.2
nitrogen source
L-Proline (N)
N.D.
+0.2
+0.4
+0.2
+0.0
nitrogen source
L-Valine (N)
N.D.
-0.2
+1.3
-0.0
-0.0
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