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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_2165 and PfGW456L13_2166 are separated by 187 nucleotides
PfGW456L13_2166 and PfGW456L13_2167 are separated by 43 nucleotides
PfGW456L13_2167 and PfGW456L13_2168 are separated by 138 nucleotides
PfGW456L13_2168 and PfGW456L13_2169 are separated by 377 nucleotides
PfGW456L13_2165 - Lipid A export ATP-binding/permease protein MsbA, at 2,367,863 to 2,369,680
_2165
PfGW456L13_2166 - Sensory box/GGDEF family protein, at 2,369,868 to 2,372,327
_2166
PfGW456L13_2167 - Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C, at 2,372,371 to 2,373,165
_2167
PfGW456L13_2168 - GGDEF domain protein, at 2,373,304 to 2,374,230
_2168
PfGW456L13_2169 - Oxidoreductase, short chain dehydrogenase/reductase family, at 2,374,608 to 2,375,348
_2169
Group
Condition
PfGW456L13
_2165
PfGW456L13
_2166
PfGW456L13
_2167
PfGW456L13
_2168
PfGW456L13
_2169
carbon source
Putrescine (C)
-0.0
+0.4
-0.1
-0.0
-2.3
carbon source
D-Galactose (C)
-0.3
-0.3
-0.0
-0.0
-1.1
carbon source
D-Glucose (C)
-0.1
-0.3
-0.1
+0.1
-1.3
carbon source
Trisodium citrate (C)
-0.2
-0.0
+0.1
-0.4
-1.0
carbon source
D-Alanine (C)
-0.1
+0.1
-0.0
+0.1
-1.6
carbon source
succinate (C)
+0.1
+0.1
+0.0
-0.3
-1.3
carbon source
D-Gluconic Acid (C)
-0.2
-0.3
+0.1
+0.0
-0.7
carbon source
L-Phenylalanine (C)
+0.1
-0.1
-0.0
+0.1
-1.2
carbon source
L-Asparagine (C)
-0.1
-0.2
-0.0
-0.2
-0.7
carbon source
L-Lactate (C)
+0.1
-0.4
+0.1
-0.5
-0.4
carbon source
L-Asparagine (C)
-0.1
+0.0
-0.1
+0.1
-0.9
carbon source
L-Alanine (C)
-0.1
-0.1
+0.1
-0.0
-0.8
carbon source
L-Arabinose (C)
-0.2
+0.0
-0.0
-0.3
-0.4
carbon source
D-Fructose (C)
-0.1
-0.1
-0.1
-0.0
-0.6
carbon source
D-Mannose (C)
-0.1
-0.1
-0.1
-0.0
-0.5
nitrogen source
Putrescine (N)
-0.1
-0.1
+0.0
+0.0
-0.7
nitrogen source
Glycine (N)
+0.0
+0.0
+0.0
-0.1
-0.8
carbon source
D-Lactate (C)
+0.0
+0.0
-0.1
-0.3
-0.5
carbon source
D-Galactose (C)
-0.0
-0.0
+0.1
+0.1
-0.7
nitrogen source
Cytosine (N)
+0.1
-0.1
+0.0
-0.1
-0.6
carbon source
L-Alanine (C)
-0.1
+0.1
+0.0
+0.1
-0.7
carbon source
D-Alanine (C)
-0.1
+0.2
+0.0
-0.1
-0.6
carbon source
casaminos (C)
-0.1
+0.0
+0.0
+0.2
-0.6
nitrogen source
L-Valine (N)
+0.1
-0.0
+0.0
+0.1
-0.5
carbon source
L-Glutamine (C)
-0.2
+0.1
+0.0
-0.4
+0.1
carbon source
D,L-Lactate (C)
+0.2
+0.3
+0.1
+0.0
-0.7
stress
D-Cycloserine 0.125 mg/ml
-0.3
+0.0
+0.0
-0.2
+0.3
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.2
+0.0
+0.2
+0.2
-0.7
carbon source
octanoate (C)
+0.0
-0.2
+0.1
-0.4
+0.7
carbon source
a-Ketoglutaric (C)
-0.0
-0.2
+0.2
+0.2
+0.4
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