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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2110 and PfGW456L13_2111 overlap by 8 nucleotides
PfGW456L13_2111 and PfGW456L13_2112 are separated by 67 nucleotides
PfGW456L13_2112 and PfGW456L13_2113 are separated by 342 nucleotides
PfGW456L13_2113 and PfGW456L13_2114 are separated by 137 nucleotides
PfGW456L13_2110 - Thymidylate kinase (EC 2.7.4.9), at 2,315,272 to 2,315,904
_2110
PfGW456L13_2111 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 2,315,897 to 2,316,883
_2111
PfGW456L13_2112 - Putative deoxyribonuclease YcfH, at 2,316,951 to 2,317,736
_2112
PfGW456L13_2113 - Transcriptional regulator, TetR family, at 2,318,079 to 2,318,717
_2113
PfGW456L13_2114 - Molybdenum cofactor biosynthesis protein MoaA, at 2,318,855 to 2,319,823
_2114
Group
Condition
PfGW456L13
_2110
PfGW456L13
_2111
PfGW456L13
_2112
PfGW456L13
_2113
PfGW456L13
_2114
nitrogen source
nitrate (N)
N.D.
N.D.
-0.1
+0.2
-1.5
carbon source
Tween 20 (C)
N.D.
N.D.
-0.3
-0.8
+0.1
stress
Lomefloxacin 0.0004 mM
N.D.
N.D.
-0.1
-0.6
-0.3
carbon source
Putrescine (C)
N.D.
N.D.
-0.7
+0.1
-0.4
stress
Dimethyl Sulfoxide 7.5 vol%
N.D.
N.D.
-0.1
-0.2
-0.3
carbon source
D-Fructose (C)
N.D.
N.D.
-0.3
-0.1
-0.2
carbon source
L-Arabinose (C)
N.D.
N.D.
-0.4
-0.2
-0.0
carbon source
L-Histidine (C)
N.D.
N.D.
-0.1
+0.3
-0.5
carbon source
L-Tryptophan (C)
N.D.
N.D.
+0.0
+0.8
-1.2
carbon source
D-Alanine (C)
N.D.
N.D.
-0.3
+0.3
-0.1
carbon source
L-Glutamine (C)
N.D.
N.D.
-0.5
+1.0
-0.6
carbon source
D-Lactate (C)
N.D.
N.D.
+0.3
-0.2
-0.2
nitrogen source
Putrescine (N)
N.D.
N.D.
-0.2
-0.2
+0.3
carbon source
L-Histidine (C)
N.D.
N.D.
+0.1
+0.3
-0.5
nitrogen source
Ammonium chloride (N)
N.D.
N.D.
+0.1
-0.3
+0.2
carbon source
L-Tryptophan (C)
N.D.
N.D.
+0.4
+0.9
-1.2
carbon source
D-Alanine (C)
N.D.
N.D.
-0.3
+0.4
+0.1
carbon source
Tween 20 (C)
N.D.
N.D.
+0.3
+0.2
-0.3
carbon source
L-Alanine (C)
N.D.
N.D.
-0.2
+0.2
+0.3
carbon source
Trisodium citrate (C)
N.D.
N.D.
+0.2
+0.8
-0.7
carbon source
L-Valine (C)
N.D.
N.D.
+0.1
+0.5
-0.3
stress
Chloride 400 mM
N.D.
N.D.
-0.2
+0.6
-0.1
lb
LB
N.D.
N.D.
+0.2
-0.2
+0.4
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
-0.3
+0.0
+0.8
carbon source
D,L-Lactate (C)
N.D.
N.D.
+0.3
+0.4
-0.2
carbon source
D-Glucose (C)
N.D.
N.D.
+0.4
-0.1
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
N.D.
-0.0
+0.5
+0.3
carbon source
L-Glutamine (C)
N.D.
N.D.
-0.1
+1.0
-0.1
carbon source
D-Serine (C)
N.D.
N.D.
+0.4
+0.6
+0.0
carbon source
octanoate (C)
N.D.
N.D.
+0.6
+0.9
+0.2
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