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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2058 and PfGW456L13_2059 are separated by 266 nucleotides
PfGW456L13_2059 and PfGW456L13_2060 are separated by 108 nucleotides
PfGW456L13_2060 and PfGW456L13_2061 are separated by 222 nucleotides
PfGW456L13_2061 and PfGW456L13_5195 are separated by 385 nucleotides
PfGW456L13_2058 - Short-chain dehydrogenase/reductase SDR, at 2,261,022 to 2,261,783
_2058
PfGW456L13_2059 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 2,262,050 to 2,263,435
_2059
PfGW456L13_2060 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 2,263,544 to 2,265,508
_2060
PfGW456L13_2061 - FIG00956448: hypothetical protein, at 2,265,731 to 2,266,489
_2061
PfGW456L13_5195 - tRNA-Glu-TTC, at 2,266,875 to 2,266,947
_5195
Group
Condition
PfGW456L13
_2058
PfGW456L13
_2059
PfGW456L13
_2060
PfGW456L13
_2061
PfGW456L13
_5195
carbon source
L-Tryptophan (C)
-0.2
-0.0
-0.2
-0.2
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
-0.3
-0.1
-0.2
N.D.
carbon source
L-Alanine (C)
-0.0
-0.0
-0.1
-0.3
N.D.
carbon source
D-Fructose (C)
-0.2
+0.0
-0.1
-0.2
N.D.
nitrogen source
L-Citrulline (N)
-0.1
-0.1
-0.0
-0.3
N.D.
nitrogen source
L-Lysine (N)
-0.2
-0.1
-0.0
-0.1
N.D.
carbon source
D,L-Lactate (C)
-0.1
-0.2
-0.3
+0.1
N.D.
lb
LB
+0.1
-0.2
-0.1
-0.1
N.D.
nitrogen source
nitrate (N)
-0.2
-0.1
+0.0
-0.1
N.D.
carbon source
D-Lactate (C)
-0.1
-0.3
+0.1
-0.0
N.D.
carbon source
D-Gluconic Acid (C)
+0.2
-0.2
-0.1
-0.2
N.D.
carbon source
D-Fructose (C)
+0.1
-0.3
+0.1
-0.2
N.D.
carbon source
L-Malic (C)
-0.1
+0.4
-0.2
-0.4
N.D.
carbon source
L-Lactate (C)
+0.2
-0.1
+0.0
-0.3
N.D.
stress
sodium fluoride 12.5 mM
+0.1
+0.1
-0.2
-0.1
N.D.
nitrogen source
L-Threonine (N)
-0.1
+0.2
-0.0
-0.2
N.D.
nitrogen source
Glycine (N)
+0.0
+0.2
-0.1
-0.2
N.D.
stress
Lomefloxacin 0.0004 mM
-0.0
+0.3
-0.1
-0.2
N.D.
nitrogen source
L-Valine (N)
-0.1
+0.2
+0.0
-0.2
N.D.
nitrogen source
Gly-DL-Asp (N)
+0.2
+0.2
-0.1
-0.3
N.D.
stress
Paraquat dichloride 0.032 mg/ml
+0.1
+0.2
-0.1
-0.2
N.D.
stress
Aluminum chloride 5 mM
+0.2
-0.2
-0.0
+0.0
N.D.
stress
A22 0.04 mg/ml
+0.1
+0.1
-0.1
+0.1
N.D.
carbon source
octanoate (C)
-0.1
+0.1
-0.0
+0.3
N.D.
carbon source
D-Galactose (C)
+0.2
+0.1
-0.2
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.0
+0.2
+0.3
-0.1
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
+0.3
+0.0
+0.3
N.D.
carbon source
L-Phenylalanine (C)
+0.2
+0.2
-0.1
+0.1
N.D.
stress
Cephalothin 3 mg/ml
+0.1
+0.1
+0.1
+0.1
N.D.
control
LB control
+0.2
+0.0
+0.1
+0.2
N.D.
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