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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2054 and PfGW456L13_2055 are separated by 69 nucleotides
PfGW456L13_2055 and PfGW456L13_2056 are separated by 213 nucleotides
PfGW456L13_2056 and PfGW456L13_2057 are separated by 131 nucleotides
PfGW456L13_2057 and PfGW456L13_2058 are separated by 238 nucleotides
PfGW456L13_2054 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit, at 2,256,804 to 2,257,610
_2054
PfGW456L13_2055 - Putative membrane protein, at 2,257,680 to 2,258,735
_2055
PfGW456L13_2056 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 2,258,949 to 2,259,647
_2056
PfGW456L13_2057 - Putative NADP-dependent oxidoreductase PA1648, at 2,259,779 to 2,260,783
_2057
PfGW456L13_2058 - Short-chain dehydrogenase/reductase SDR, at 2,261,022 to 2,261,783
_2058
Group
Condition
PfGW456L13
_2054
PfGW456L13
_2055
PfGW456L13
_2056
PfGW456L13
_2057
PfGW456L13
_2058
carbon source
octanoate (C)
-0.3
-0.4
N.D.
-0.1
-0.1
carbon source
L-Glutamine (C)
+0.0
-0.7
N.D.
-0.2
+0.1
carbon source
L-Malic (C)
-0.1
-0.3
N.D.
-0.2
-0.1
stress
Lomefloxacin 0.0004 mM
-0.4
-0.2
N.D.
-0.1
-0.0
nitrogen source
L-Arginine (N)
-0.3
-0.2
N.D.
+0.0
-0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.4
N.D.
-0.2
+0.2
carbon source
D-Gluconic Acid (C)
+0.3
-0.5
N.D.
-0.2
-0.1
carbon source
L-Histidine (C)
+0.2
-0.2
N.D.
-0.2
-0.1
carbon source
D-Galactose (C)
-0.1
-0.2
N.D.
-0.2
+0.2
carbon source
L-Valine (C)
+0.2
-0.3
N.D.
-0.2
-0.0
stress
Cephalothin 3 mg/ml
-0.3
+0.1
N.D.
-0.1
+0.1
carbon source
D-Alanine (C)
+0.3
-0.5
N.D.
+0.1
-0.1
carbon source
L-Glutamine (C)
+0.3
-0.3
N.D.
+0.0
-0.1
stress
Dimethyl Sulfoxide 7.5 vol%
-0.3
+0.2
N.D.
-0.0
+0.1
carbon source
Putrescine (C)
+0.2
-0.1
N.D.
-0.2
+0.1
carbon source
a-Ketoglutaric (C)
+0.5
-0.4
N.D.
-0.2
+0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
-0.3
N.D.
-0.1
+0.0
carbon source
D-Mannose (C)
+0.2
-0.3
N.D.
+0.1
+0.1
lb
LB
-0.3
+0.3
N.D.
-0.0
+0.1
carbon source
L-Malic (C)
+0.3
-0.2
N.D.
-0.2
+0.1
nitrogen source
nitrate (N)
+0.4
+0.0
N.D.
-0.1
-0.2
nitrogen source
D-Serine (N)
+0.4
+0.1
N.D.
-0.2
+0.1
carbon source
D-Galactose (C)
+0.4
-0.2
N.D.
-0.0
+0.2
carbon source
L-Arabinose (C)
+0.2
+0.1
N.D.
+0.2
-0.1
carbon source
D-Glucose (C)
+0.3
-0.0
N.D.
+0.3
-0.2
nitrogen source
Gly-DL-Asp (N)
+0.4
-0.0
N.D.
-0.0
+0.2
stress
Aluminum chloride 5 mM
+0.5
+0.0
N.D.
-0.0
+0.2
carbon source
succinate (C)
+0.5
+0.4
N.D.
-0.1
-0.1
carbon source
D-Lactate (C)
+0.2
+0.2
N.D.
+0.4
-0.1
nitrogen source
Gly-Glu (N)
+0.4
+0.5
N.D.
-0.0
-0.1
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