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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2016 and PfGW456L13_2017 are separated by 156 nucleotides
PfGW456L13_2017 and PfGW456L13_2018 are separated by 120 nucleotides
PfGW456L13_2018 and PfGW456L13_2019 are separated by 157 nucleotides
PfGW456L13_2019 and PfGW456L13_2020 are separated by 282 nucleotides
PfGW456L13_2016 - C4-dicarboxylate transporter
(from data)
, at 2,219,599 to 2,220,933
_2016
PfGW456L13_2017 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 2,221,090 to 2,222,271
_2017
PfGW456L13_2018 - Protein sprT, at 2,222,392 to 2,222,886
_2018
PfGW456L13_2019 - probable membrane protein YPO2362, at 2,223,044 to 2,223,646
_2019
PfGW456L13_2020 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 2,223,929 to 2,224,753
_2020
Group
Condition
PfGW456L13
_2016
PfGW456L13
_2017
PfGW456L13
_2018
PfGW456L13
_2019
PfGW456L13
_2020
carbon source
succinate (C)
-3.3
-0.1
+0.1
+0.3
+0.3
carbon source
Tween 20 (C)
-2.3
-0.0
-0.0
-0.1
+0.2
carbon source
L-Malic (C)
-2.1
+0.3
+0.1
-0.2
-0.1
stress
Nickel (II) chloride 1 mM
-0.5
-0.2
-0.0
+0.0
-0.5
carbon source
octanoate (C)
-1.2
+0.2
-0.0
+0.2
-0.3
stress
Cobalt chloride 0.16 mM
-0.1
-0.2
-0.1
+0.0
-0.5
carbon source
D-Mannose (C)
-0.2
+0.0
-0.2
-0.1
-0.3
carbon source
D-Fructose (C)
-0.0
-0.2
+0.3
-0.1
-0.2
carbon source
Glycerol (C)
-0.4
+0.2
+0.2
-0.2
-0.1
carbon source
D-Galactose (C)
-0.2
+0.2
+0.0
+0.0
-0.3
carbon source
L-Tryptophan (C)
+0.2
-0.1
+0.1
-0.1
-0.3
stress
Aluminum chloride 2.5 mM
-0.3
+0.0
-0.2
-0.0
+0.2
nitrogen source
Gly-DL-Asp (N)
+0.1
-0.1
+0.2
-0.2
-0.2
nitrogen source
L-Isoleucine (N)
+0.3
+0.1
-0.0
-0.4
-0.1
carbon source
a-Ketoglutaric (C)
-0.1
-0.4
+0.2
+0.3
+0.0
stress
Thallium(I) acetate 0.004 mg/ml
-0.1
-0.3
+0.1
+0.1
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
-0.3
+0.2
+0.1
+0.0
-0.0
nitrogen source
L-Valine (N)
+0.4
-0.0
+0.0
-0.4
+0.0
nitrogen source
L-Alanine (N)
+0.3
+0.2
-0.1
-0.2
-0.2
nitrogen source
Ammonium chloride (N)
+0.3
-0.1
+0.0
+0.2
-0.4
nitrogen source
Putrescine (N)
+0.3
-0.1
+0.2
-0.0
-0.2
stress
Vancomycin 0.5 mg/ml
+0.1
-0.2
+0.1
-0.1
+0.5
stress
Bacitracin 1 mg/ml
-0.1
+0.1
-0.3
+0.2
+0.3
carbon source
a-Ketoglutaric (C)
+0.3
+0.1
-0.1
-0.1
+0.1
carbon source
Putrescine (C)
+0.4
+0.3
-0.3
-0.0
-0.1
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.3
+0.1
-0.1
+0.2
-0.1
nitrogen source
L-Arginine (N)
+0.3
+0.3
+0.0
+0.0
+0.2
carbon source
D-Gluconic Acid (C)
-0.2
+0.4
+0.1
+0.4
+0.2
carbon source
L-Lactate (C)
+0.5
+0.3
+0.3
-0.0
-0.2
carbon source
Glycerol (C)
+0.4
+0.4
+0.1
-0.2
+0.2
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