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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_2000 and PfGW456L13_2001 are separated by 363 nucleotides
PfGW456L13_2001 and PfGW456L13_2002 are separated by 3 nucleotides
PfGW456L13_2002 and PfGW456L13_2003 are separated by 15 nucleotides
PfGW456L13_2003 and PfGW456L13_2004 are separated by 31 nucleotides
PfGW456L13_2000 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 2,203,093 to 2,203,905
_2000
PfGW456L13_2001 - Flagellar basal-body rod protein FlgB, at 2,204,269 to 2,204,676
_2001
PfGW456L13_2002 - Flagellar basal-body rod protein FlgC, at 2,204,680 to 2,205,123
_2002
PfGW456L13_2003 - Flagellar basal-body rod modification protein FlgD, at 2,205,139 to 2,205,861
_2003
PfGW456L13_2004 - Flagellar hook protein FlgE, at 2,205,893 to 2,207,224
_2004
Group
Condition
PfGW456L13
_2000
PfGW456L13
_2001
PfGW456L13
_2002
PfGW456L13
_2003
PfGW456L13
_2004
carbon source
L-Lactate (C)
-0.5
-0.2
-0.3
-0.1
-0.2
carbon source
D-Fructose (C)
+0.2
-0.3
-0.2
-0.4
-0.2
carbon source
D-Gluconic Acid (C)
-0.2
-0.0
-1.0
+0.1
+0.2
nitrogen source
Gly-Glu (N)
+0.2
-0.3
+0.0
-0.3
-0.3
carbon source
D,L-Lactate (C)
+0.0
+0.1
-0.9
+0.3
+0.1
carbon source
octanoate (C)
-1.0
-0.1
-0.0
+0.5
+0.3
carbon source
D-Lactate (C)
-0.4
-0.6
+0.4
+0.2
+0.1
carbon source
D-Glucose (C)
+0.3
-0.8
+0.1
+0.4
-0.2
carbon source
L-Malic (C)
+0.2
-0.3
+0.2
-0.2
+0.1
stress
Bacitracin 0.5 mg/ml
+0.2
+0.3
-0.3
+0.2
-0.1
nitrogen source
Gly-DL-Asp (N)
+0.0
-0.1
+0.7
-0.2
-0.1
stress
Bacitracin 1 mg/ml
-0.2
+0.4
-0.2
+0.3
+0.1
carbon source
a-Ketoglutaric (C)
+0.2
+0.7
+0.1
-0.3
-0.1
stress
Aluminum chloride 5 mM
-0.1
-0.3
+0.6
+0.2
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
+0.1
-0.2
+0.6
+0.0
carbon source
D-Fructose (C)
+0.3
-0.3
+0.2
+0.1
+0.3
nitrogen source
L-Lysine (N)
-0.2
+0.4
+0.3
+0.2
-0.1
carbon source
D-Galactose (C)
+0.1
+0.4
-0.1
-0.1
+0.3
carbon source
L-Phenylalanine (C)
-0.2
+0.4
+0.1
+0.4
+0.1
nitrogen source
L-Isoleucine (N)
+0.1
+0.5
+0.3
+0.1
-0.1
nitrogen source
L-Histidine (N)
+0.2
+0.4
+0.3
-0.1
+0.0
nitrogen source
L-Serine (N)
+0.3
+0.4
+0.2
+0.2
-0.1
carbon source
L-Arabinose (C)
+0.4
+0.4
-0.1
-0.1
+0.4
carbon source
L-Tryptophan (C)
+0.1
+0.1
+0.3
+0.3
+0.2
nitrogen source
L-Alanine (N)
+0.3
+0.4
+0.4
+0.0
-0.0
carbon source
D-Lactate (C)
+0.3
-0.1
+0.4
+0.4
+0.1
nitrogen source
L-Proline (N)
+0.1
+0.4
+0.5
+0.3
+0.0
nitrogen source
L-Arginine (N)
+0.2
+0.2
+0.7
+0.3
+0.1
carbon source
L-Arabinose (C)
+0.2
+0.5
+0.2
+0.3
+0.6
carbon source
Putrescine (C)
+0.5
+0.9
+0.7
+0.6
+0.9
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