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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_1944 and PfGW456L13_1945 are separated by 211 nucleotides
PfGW456L13_1945 and PfGW456L13_1946 are separated by 145 nucleotides
PfGW456L13_1946 and PfGW456L13_1947 overlap by 4 nucleotides
PfGW456L13_1947 and PfGW456L13_1948 are separated by 78 nucleotides
PfGW456L13_1944 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 2,134,637 to 2,135,761
_1944
PfGW456L13_1945 - FIG00964654: hypothetical protein, at 2,135,973 to 2,136,299
_1945
PfGW456L13_1946 - FIG00959431: hypothetical protein, at 2,136,445 to 2,136,768
_1946
PfGW456L13_1947 - CTP synthase (EC 6.3.4.2), at 2,136,765 to 2,137,472
_1947
PfGW456L13_1948 - Transcriptional regulator, LysR family, at 2,137,551 to 2,138,429
_1948
Group
Condition
PfGW456L13
_1944
PfGW456L13
_1945
PfGW456L13
_1946
PfGW456L13
_1947
PfGW456L13
_1948
carbon source
L-Alanine (C)
+0.1
-0.1
N.D.
-0.0
-2.3
carbon source
D-Lactate (C)
-0.1
-0.2
N.D.
-0.2
-1.3
stress
Aluminum chloride 2.5 mM
+0.5
-0.7
N.D.
-0.1
-1.4
stress
nitrite 10 mM
-0.1
-0.2
N.D.
+0.2
-1.4
carbon source
D-Gluconic Acid (C)
-0.1
-0.2
N.D.
+0.6
-1.7
carbon source
L-Histidine (C)
-0.1
-0.1
N.D.
+0.0
-1.1
carbon source
D-Gluconic Acid (C)
+0.2
-0.0
N.D.
-0.1
-1.4
carbon source
D-Glucose (C)
-0.2
+0.0
N.D.
-0.4
-0.7
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.2
N.D.
-0.2
-0.6
stress
Vancomycin 0.125 mg/ml
-0.0
-0.4
N.D.
+0.3
-1.1
stress
nitrite 5 mM
+0.1
-0.1
N.D.
-0.1
-1.0
control
LB control
-0.0
+0.0
N.D.
-0.1
-1.1
carbon source
L-Arabinose (C)
+0.2
-0.2
N.D.
-0.7
-0.5
carbon source
D-Alanine (C)
-0.0
-0.2
N.D.
+0.2
-1.1
lb
LB
+0.0
-0.3
N.D.
+0.2
-1.0
stress
Aluminum chloride 5 mM
+0.3
-0.5
N.D.
+0.1
-0.7
stress
Vancomycin 0.5 mg/ml
-0.0
-0.1
N.D.
+0.2
-0.9
nitrogen source
Gly-Glu (N)
-0.4
-0.3
N.D.
+0.2
-0.2
carbon source
L-Arabinose (C)
-0.1
+0.0
N.D.
+0.5
-1.0
carbon source
a-Ketoglutaric (C)
-0.6
+0.0
N.D.
+0.8
-0.5
carbon source
L-Phenylalanine (C)
+0.3
+0.2
N.D.
+0.1
-0.7
carbon source
L-Tryptophan (C)
+0.2
-0.4
N.D.
-0.2
+0.4
carbon source
Glycerol (C)
+0.1
+0.4
N.D.
+0.5
-0.5
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.2
N.D.
+0.3
+0.8
carbon source
D,L-Lactate (C)
-0.2
-0.2
N.D.
+0.6
+0.8
carbon source
L-Malic (C)
-0.1
+0.4
N.D.
+0.3
+0.5
stress
Lomefloxacin 0.0004 mM
+0.3
+0.1
N.D.
-0.2
+1.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.1
N.D.
+0.5
+0.5
stress
KB with PTLB purified from Pseudomonas sp. FW300-N2F2 0.008 x
+0.2
+0.0
N.D.
+0.1
+1.1
carbon source
D-Fructose (C)
+0.2
-0.1
N.D.
+0.5
+0.8
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