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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1936 and PfGW456L13_1937 are separated by 204 nucleotides
PfGW456L13_1937 and PfGW456L13_1938 are separated by 90 nucleotides
PfGW456L13_1938 and PfGW456L13_1939 are separated by 124 nucleotides
PfGW456L13_1939 and PfGW456L13_1940 overlap by 4 nucleotides
PfGW456L13_1936 - RNA polymerase sigma-70 factor, ECF subfamily, at 2,127,057 to 2,127,497
_1936
PfGW456L13_1937 - LysR-family transcriptional regulator STM3020, at 2,127,702 to 2,128,556
_1937
PfGW456L13_1938 - FIG00961830: hypothetical protein, at 2,128,647 to 2,129,081
_1938
PfGW456L13_1939 - dTDP-6-deoxy-L-hexose 3-O-methyltransferase, at 2,129,206 to 2,129,928
_1939
PfGW456L13_1940 - hypothetical protein, at 2,129,925 to 2,130,791
_1940
Group
Condition
PfGW456L13
_1936
PfGW456L13
_1937
PfGW456L13
_1938
PfGW456L13
_1939
PfGW456L13
_1940
carbon source
L-Lactate (C)
-4.1
-0.2
+0.1
+0.0
+0.0
carbon source
Putrescine (C)
-3.9
-0.1
-0.2
+0.1
+0.5
stress
Vancomycin 0.25 mg/ml
-1.4
-0.1
-0.0
-0.1
-0.2
carbon source
D-Galactose (C)
-0.9
-0.2
-0.1
-0.1
-0.5
carbon source
L-Phenylalanine (C)
-0.8
-0.4
-0.2
-0.0
-0.2
carbon source
L-Glutamine (C)
-1.8
+0.3
-0.1
+0.1
-0.0
carbon source
L-Valine (C)
-0.9
+0.0
+0.0
-0.1
-0.4
carbon source
D-Lactate (C)
-1.3
-0.1
+0.3
+0.1
-0.3
carbon source
D-Alanine (C)
-1.6
+0.1
+0.1
+0.2
-0.1
carbon source
Glycerol (C)
-1.7
+0.2
+0.3
-0.3
+0.1
nitrogen source
L-Lysine (N)
-1.0
+0.0
+0.1
-0.2
-0.0
carbon source
L-Tryptophan (C)
-1.4
+0.1
+0.1
-0.1
+0.2
carbon source
D,L-Lactate (C)
+0.3
-0.4
-0.1
-0.4
-0.5
stress
Chloride 400 mM
-0.9
-0.2
-0.1
+0.2
-0.1
stress
nitrite 10 mM
-1.3
-0.1
+0.1
+0.1
+0.1
carbon source
L-Asparagine (C)
-0.9
-0.1
+0.3
+0.0
-0.3
nitrogen source
Cytosine (N)
-1.1
+0.1
-0.1
+0.0
+0.1
carbon source
casaminos (C)
-1.0
-0.2
-0.0
+0.0
+0.3
stress
Fusidic 0.08 mg/ml
-0.6
+0.2
-0.1
+0.1
-0.4
stress
D-Cycloserine 0.125 mg/ml
-0.9
-0.0
+0.1
-0.3
+0.3
carbon source
D-Mannose (C)
-0.7
+0.3
+0.1
-0.1
-0.3
carbon source
a-Ketoglutaric (C)
+0.9
-0.2
-0.1
-0.2
-0.5
carbon source
succinate (C)
+0.7
+0.2
-0.4
+0.1
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
-0.3
+0.2
+0.3
+0.4
carbon source
D-Fructose (C)
+0.9
+0.0
-0.2
+0.3
-0.4
carbon source
L-Malic (C)
+0.8
+0.4
-0.1
+0.0
-0.3
carbon source
D-Galactose (C)
-0.3
+0.5
+0.4
-0.1
+0.4
carbon source
D-Glucosamine Hydrochloride (C)
+0.7
+0.4
-0.0
+0.0
-0.2
nitrogen source
Ammonium chloride (N)
+0.6
+0.2
+0.1
+0.3
-0.2
control
LB control
+1.0
+0.0
+0.1
+0.0
+0.2
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