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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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500 nt
PfGW456L13_1929 and PfGW456L13_1930 are separated by 67 nucleotides
PfGW456L13_1930 and PfGW456L13_1931 are separated by 97 nucleotides
PfGW456L13_1931 and PfGW456L13_1932 are separated by 136 nucleotides
PfGW456L13_1932 and PfGW456L13_1933 are separated by 156 nucleotides
PfGW456L13_1929 - Putative threonine efflux protein, at 2,122,860 to 2,123,522
_1929
PfGW456L13_1930 - Bacterial transcription activator, effector binding protein, at 2,123,590 to 2,124,075
_1930
PfGW456L13_1931 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,124,173 to 2,124,661
_1931
PfGW456L13_1932 - Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1), at 2,124,798 to 2,125,268
_1932
PfGW456L13_1933 - Ketosteroid isomerase homolog, at 2,125,425 to 2,125,850
_1933
Group
Condition
PfGW456L13
_1929
PfGW456L13
_1930
PfGW456L13
_1931
PfGW456L13
_1932
PfGW456L13
_1933
carbon source
D-Lactate (C)
-0.2
-0.4
-0.5
+0.0
N.D.
carbon source
D-Galactose (C)
-0.4
+0.2
+0.2
-1.0
N.D.
carbon source
succinate (C)
-0.3
-0.3
-0.1
-0.2
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
-0.2
+0.1
-0.6
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
-0.2
+0.2
-0.6
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
+0.0
+0.4
-1.0
N.D.
carbon source
L-Valine (C)
-0.4
+0.1
-0.2
-0.1
N.D.
carbon source
D-Alanine (C)
-0.4
+0.1
+0.1
-0.2
N.D.
carbon source
L-Malic (C)
+0.1
-0.8
+0.1
+0.1
N.D.
carbon source
L-Malic (C)
-0.1
+0.1
+0.5
-0.9
N.D.
stress
nitrite 5 mM
+0.3
-0.3
-0.3
-0.1
N.D.
carbon source
a-Ketoglutaric (C)
+0.3
-0.2
+0.1
-0.4
N.D.
nitrogen source
L-Tryptophan (N)
-0.4
-0.3
-0.1
+0.6
N.D.
stress
Fusidic 0.08 mg/ml
-0.1
-0.4
-0.2
+0.6
N.D.
stress
Cephalothin 3 mg/ml
-0.1
+0.0
-0.2
+0.4
N.D.
carbon source
D-Galactose (C)
+0.0
+0.3
+0.2
-0.4
N.D.
nitrogen source
Ammonium chloride (N)
-0.2
-0.2
+0.0
+0.6
N.D.
nitrogen source
L-Proline (N)
+0.2
-0.2
-0.1
+0.4
N.D.
carbon source
D-Serine (C)
-0.3
-0.1
+0.2
+0.5
N.D.
nitrogen source
L-Asparagine (N)
-0.2
-0.1
+0.2
+0.4
N.D.
nitrogen source
L-Alanine (N)
-0.1
-0.0
-0.1
+0.6
N.D.
stress
A22 0.04 mg/ml
+0.1
-0.3
-0.3
+1.0
N.D.
carbon source
Putrescine (C)
-0.4
+0.2
+0.2
+0.6
N.D.
carbon source
L-Lactate (C)
-0.1
-0.1
+0.1
+0.8
N.D.
nitrogen source
L-Serine (N)
-0.2
-0.2
+0.1
+0.9
N.D.
stress
Vancomycin 0.5 mg/ml
+0.1
+0.0
-0.2
+0.8
N.D.
nitrogen source
Gly-Glu (N)
+0.1
-0.0
+0.4
+0.3
N.D.
carbon source
L-Alanine (C)
+0.2
+0.0
+0.2
+0.3
N.D.
carbon source
L-Arabinose (C)
+0.1
+0.2
+0.1
+0.5
N.D.
stress
Bacitracin 1 mg/ml
+0.2
-0.1
+0.2
+0.8
N.D.
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