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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1871 and PfGW456L13_1872 are separated by 63 nucleotides
PfGW456L13_1872 and PfGW456L13_1873 are separated by 184 nucleotides
PfGW456L13_1873 and PfGW456L13_1874 are separated by 81 nucleotides
PfGW456L13_1874 and PfGW456L13_1875 are separated by 34 nucleotides
PfGW456L13_1871 - Acetyl-CoA carboxylase alpha subunit, at 2,059,242 to 2,059,604
_1871
PfGW456L13_1872 - Carbamate kinase (EC 2.7.2.2), at 2,059,668 to 2,060,597
_1872
PfGW456L13_1873 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 2,060,782 to 2,061,792
_1873
PfGW456L13_1874 - Arginine deiminase (EC 3.5.3.6), at 2,061,874 to 2,063,130
_1874
PfGW456L13_1875 - Arginine/ornithine antiporter ArcD, at 2,063,165 to 2,064,592
_1875
Group
Condition
PfGW456L13
_1871
PfGW456L13
_1872
PfGW456L13
_1873
PfGW456L13
_1874
PfGW456L13
_1875
control
LB control
-0.2
-0.0
-0.2
-0.1
-0.9
control
LB control
-0.1
-0.1
-0.2
-0.1
-0.9
control
LB control
-0.3
-0.1
-0.1
-0.1
-0.8
control
LB control
+0.0
-0.1
-0.0
-0.3
-0.8
lb
LB
-0.2
+0.1
-0.2
-0.4
-0.2
carbon source
D-Fructose (C)
-0.4
-0.0
-0.1
-0.2
-0.1
carbon source
L-Glutamine (C)
+0.1
-0.3
-0.1
-0.1
-0.3
nitrogen source
NAG (N)
-0.4
-0.0
-0.1
-0.3
+0.0
carbon source
L-Alanine (C)
-0.1
+0.1
-0.1
-0.4
-0.1
stress
nitrate 200 mM
-0.2
-0.0
+0.1
-0.3
-0.1
carbon source
L-Malic (C)
-0.3
+0.0
-0.1
+0.3
-0.4
carbon source
D-Lactate (C)
-0.7
-0.0
-0.0
+0.1
+0.1
carbon source
L-Malic (C)
-0.1
+0.0
+0.1
-0.3
-0.2
carbon source
L-Arabinose (C)
-0.2
-0.3
+0.1
+0.2
-0.0
carbon source
D-Galactose (C)
-0.0
-0.2
+0.3
-0.2
+0.1
nitrogen source
L-Glutamic (N)
+0.1
-0.1
+0.0
-0.4
+0.2
carbon source
octanoate (C)
-0.6
-0.4
+0.3
+0.2
+0.3
stress
Aluminum chloride 5 mM
+0.2
-0.3
-0.2
-0.1
+0.2
carbon source
L-Phenylalanine (C)
-0.1
-0.3
+0.2
+0.0
+0.1
stress
Lomefloxacin 0.0004 mM
-0.2
+0.1
+0.0
+0.4
-0.2
stress
Bacitracin 1 mg/ml
-0.4
+0.0
+0.1
+0.3
+0.2
carbon source
D-Glucose (C)
+0.3
-0.2
+0.1
+0.1
+0.1
carbon source
D-Gluconic Acid (C)
+0.3
+0.1
+0.1
+0.3
-0.4
carbon source
D,L-Lactate (C)
-0.2
+0.2
+0.1
+0.1
+0.3
carbon source
a-Ketoglutaric (C)
+0.5
+0.3
-0.1
+0.0
-0.2
carbon source
succinate (C)
+0.3
+0.2
+0.3
-0.1
-0.2
carbon source
L-Tryptophan (C)
+0.1
-0.1
+0.3
-0.0
+0.3
stress
Fusidic 0.03 mg/ml
+0.2
+0.1
+0.2
+0.2
+0.1
nitrogen source
D-Serine (N)
-0.0
-0.0
+0.3
+0.3
+0.4
stress
Fusidic 0.08 mg/ml
+0.2
+0.4
+0.5
+0.3
+0.2
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