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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1867 and PfGW456L13_1868 are separated by 204 nucleotides
PfGW456L13_1868 and PfGW456L13_1869 are separated by 11 nucleotides
PfGW456L13_1869 and PfGW456L13_1870 are separated by 432 nucleotides
PfGW456L13_1870 and PfGW456L13_1871 are separated by 218 nucleotides
PfGW456L13_1867 - L-serine dehydratase (EC 4.3.1.17), at 2,052,254 to 2,053,630
_1867
PfGW456L13_1868 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2)
(from data)
, at 2,053,835 to 2,056,687
_1868
PfGW456L13_1869 - glycine cleavage system H protein (EC 1.4.1.27)
(from data)
, at 2,056,699 to 2,057,082
_1869
PfGW456L13_1870 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 2,057,515 to 2,059,023
_1870
PfGW456L13_1871 - Acetyl-CoA carboxylase alpha subunit, at 2,059,242 to 2,059,604
_1871
Group
Condition
PfGW456L13
_1867
PfGW456L13
_1868
PfGW456L13
_1869
PfGW456L13
_1870
PfGW456L13
_1871
nitrogen source
Glycine (N)
-0.9
-4.8
-2.3
-1.7
-0.0
nitrogen source
L-Threonine (N)
-0.7
-2.7
-2.6
-1.6
+0.0
nitrogen source
Gly-DL-Asp (N)
+0.1
-1.5
-0.6
-0.4
-0.3
carbon source
D-Lactate (C)
-0.0
+0.0
-0.9
+0.1
-0.7
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
-0.3
-0.5
-0.6
+0.0
nitrogen source
Gly-Glu (N)
+0.1
-0.5
-0.4
-0.3
+0.3
carbon source
L-Malic (C)
+0.1
-0.1
-0.3
-0.1
-0.3
control
LB control
-0.2
+0.1
-0.4
+0.2
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.0
-0.4
+0.2
-0.2
carbon source
Trisodium citrate (C)
+0.3
-0.1
-0.6
-0.0
+0.2
carbon source
Glycerol (C)
-0.1
-0.1
+0.4
-0.3
-0.1
carbon source
L-Arabinose (C)
-0.2
-0.1
+0.6
-0.2
-0.2
carbon source
octanoate (C)
+0.1
-0.1
+0.5
+0.0
-0.6
carbon source
D-Glucose (C)
-0.1
+0.1
-0.3
+0.3
+0.3
carbon source
L-Alanine (C)
+0.3
+0.1
+0.3
-0.3
-0.1
nitrogen source
D-Serine (N)
+0.0
+0.1
+0.5
-0.3
-0.0
carbon source
D-Fructose (C)
+0.0
+0.1
+0.6
+0.0
-0.4
carbon source
L-Tryptophan (C)
+0.4
+0.1
+0.3
-0.4
+0.1
carbon source
D-Serine (C)
+0.2
+0.1
+0.4
-0.2
+0.1
carbon source
Putrescine (C)
+0.2
-0.0
+0.7
-0.1
+0.0
carbon source
D-Gluconic Acid (C)
+0.1
+0.2
-0.1
+0.4
+0.1
carbon source
L-Valine (C)
+0.4
+0.2
+0.2
-0.1
+0.1
carbon source
L-Tryptophan (C)
+0.3
-0.1
+0.4
+0.1
+0.0
carbon source
L-Valine (C)
+0.6
+0.2
+0.3
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
+0.1
+0.2
+0.3
carbon source
D-Alanine (C)
+0.8
+0.5
-0.0
-0.0
-0.1
carbon source
a-Ketoglutaric (C)
+0.4
+0.2
+0.5
+0.1
+0.0
carbon source
succinate (C)
+0.2
+0.2
+0.5
-0.0
+0.3
carbon source
D-Alanine (C)
+0.6
+0.3
+0.2
+0.3
+0.1
carbon source
a-Ketoglutaric (C)
+0.4
+0.6
+0.4
-0.2
+0.5
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