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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1864 and PfGW456L13_1865 are separated by 94 nucleotides
PfGW456L13_1865 and PfGW456L13_1866 are separated by 402 nucleotides
PfGW456L13_1866 and PfGW456L13_1867 are separated by 36 nucleotides
PfGW456L13_1867 and PfGW456L13_1868 are separated by 204 nucleotides
PfGW456L13_1864 - FIG023103: Predicted transmembrane protein, at 2,049,895 to 2,050,383
_1864
PfGW456L13_1865 - Cold shock protein CspA, at 2,050,478 to 2,050,690
_1865
PfGW456L13_1866 - Aminomethyltransferase (EC 2.1.2.10)
(from data)
, at 2,051,093 to 2,052,217
_1866
PfGW456L13_1867 - L-serine dehydratase (EC 4.3.1.17), at 2,052,254 to 2,053,630
_1867
PfGW456L13_1868 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2)
(from data)
, at 2,053,835 to 2,056,687
_1868
Group
Condition
PfGW456L13
_1864
PfGW456L13
_1865
PfGW456L13
_1866
PfGW456L13
_1867
PfGW456L13
_1868
nitrogen source
Glycine (N)
+0.1
+0.7
-3.9
-0.9
-4.8
nitrogen source
L-Threonine (N)
+0.6
+0.4
-2.0
-0.7
-2.7
carbon source
L-Lactate (C)
-0.6
-3.8
-0.1
+0.1
+0.3
carbon source
Putrescine (C)
-2.1
-1.5
-0.4
+0.2
-0.0
carbon source
D-Galactose (C)
-1.0
-2.0
+0.0
+0.1
-0.0
nitrogen source
Putrescine (N)
-0.5
-2.0
+0.0
+0.0
+0.1
nitrogen source
Cytosine (N)
-0.1
-1.9
-0.1
-0.1
-0.1
carbon source
octanoate (C)
-0.0
-1.8
-0.5
+0.1
-0.1
carbon source
L-Arabinose (C)
-0.5
-1.6
-0.2
+0.2
-0.0
control
LB control
+0.3
-1.8
-0.2
-0.1
+0.0
carbon source
D-Fructose (C)
-0.1
-1.2
-0.7
+0.0
+0.1
carbon source
L-Glutamine (C)
+0.2
-1.4
-0.3
-0.2
-0.0
stress
Fusidic 0.08 mg/ml
+0.4
-1.1
+0.2
+0.1
-0.1
carbon source
L-Tryptophan (C)
+0.6
-0.8
-0.1
+0.3
-0.1
carbon source
D-Galactose (C)
-0.9
+0.8
-0.1
+0.1
+0.0
carbon source
L-Tryptophan (C)
+0.8
-1.2
+0.2
+0.4
+0.1
carbon source
succinate (C)
+0.6
-1.2
+0.5
+0.2
+0.2
nitrogen source
Gly-DL-Asp (N)
+0.8
+1.5
-0.5
+0.1
-1.5
carbon source
L-Alanine (C)
-0.6
+0.8
+0.2
+0.3
+0.1
carbon source
L-Alanine (C)
-0.9
+1.0
+0.4
+0.3
+0.1
stress
Lomefloxacin 0.0004 mM
+0.9
+0.7
-0.2
+0.1
-0.1
carbon source
D-Gluconic Acid (C)
-0.3
+1.9
-0.2
+0.1
+0.2
carbon source
L-Histidine (C)
+0.6
+0.5
+0.4
+0.3
+0.1
carbon source
D-Serine (C)
+0.4
+1.5
-0.1
+0.0
+0.1
carbon source
a-Ketoglutaric (C)
+0.5
+0.5
+0.3
+0.4
+0.2
carbon source
L-Valine (C)
+0.5
+0.3
+0.5
+0.4
+0.2
carbon source
L-Valine (C)
+0.3
+0.9
+0.1
+0.6
+0.2
carbon source
a-Ketoglutaric (C)
+1.1
+0.4
+0.5
+0.4
+0.6
carbon source
D-Alanine (C)
-0.0
+1.9
+1.2
+0.6
+0.3
carbon source
D-Alanine (C)
-0.4
+2.0
+1.2
+0.8
+0.5
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