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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1852 and PfGW456L13_1853 are separated by 0 nucleotides
PfGW456L13_1853 and PfGW456L13_1854 are separated by 304 nucleotides
PfGW456L13_1854 and PfGW456L13_1855 overlap by 11 nucleotides
PfGW456L13_1855 and PfGW456L13_1856 are separated by 14 nucleotides
PfGW456L13_1852 - Holliday junction DNA helicase RuvA, at 2,039,589 to 2,040,197
_1852
PfGW456L13_1853 - Holliday junction DNA helicase RuvB, at 2,040,198 to 2,041,259
_1853
PfGW456L13_1854 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 2,041,564 to 2,041,854
_1854
PfGW456L13_1855 - MotA/TolQ/ExbB proton channel family protein, at 2,041,844 to 2,042,539
_1855
PfGW456L13_1856 - Tol biopolymer transport system, TolR protein, at 2,042,554 to 2,043,015
_1856
Group
Condition
PfGW456L13
_1852
PfGW456L13
_1853
PfGW456L13
_1854
PfGW456L13
_1855
PfGW456L13
_1856
carbon source
D-Galactose (C)
-3.7
-3.3
-1.7
N.D.
N.D.
carbon source
L-Malic (C)
-1.6
-2.6
-2.3
N.D.
N.D.
stress
Bacitracin 1 mg/ml
-3.6
-2.5
-0.0
N.D.
N.D.
carbon source
D-Galactose (C)
-2.6
-2.3
-1.2
N.D.
N.D.
carbon source
L-Arabinose (C)
-1.8
-2.9
-1.1
N.D.
N.D.
stress
Lomefloxacin 0.0004 mM
-2.2
-2.0
-1.0
N.D.
N.D.
carbon source
a-Ketoglutaric (C)
-2.0
-3.0
-0.2
N.D.
N.D.
carbon source
L-Alanine (C)
-1.8
-3.5
+0.4
N.D.
N.D.
carbon source
D-Serine (C)
-1.5
-2.5
-0.7
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-2.3
-1.5
-0.9
N.D.
N.D.
carbon source
Putrescine (C)
-2.0
-2.5
-0.0
N.D.
N.D.
stress
Cisplatin 0.0125 mg/ml
-2.3
-1.5
-0.6
N.D.
N.D.
carbon source
Trisodium citrate (C)
-1.4
-2.1
-1.0
N.D.
N.D.
stress
Vancomycin 0.125 mg/ml
-2.0
-1.9
-0.4
N.D.
N.D.
carbon source
L-Glutamine (C)
-1.3
-2.1
-0.9
N.D.
N.D.
carbon source
L-Phenylalanine (C)
-1.9
-1.1
-1.2
N.D.
N.D.
carbon source
L-Alanine (C)
-1.9
-1.6
-0.7
N.D.
N.D.
carbon source
D-Fructose (C)
-1.4
-2.2
-0.3
N.D.
N.D.
stress
nitrate 200 mM
-2.2
-1.7
-0.1
N.D.
N.D.
carbon source
D,L-Lactate (C)
-1.7
-1.6
-0.7
N.D.
N.D.
carbon source
L-Valine (C)
-1.5
-2.3
-0.1
N.D.
N.D.
carbon source
D-Mannose (C)
-1.2
-2.5
-0.2
N.D.
N.D.
stress
Bacitracin 0.5 mg/ml
-2.2
-1.6
-0.1
N.D.
N.D.
stress
Aluminum chloride 5 mM
-2.0
-1.8
+0.0
N.D.
N.D.
carbon source
L-Malic (C)
-1.8
-2.0
-0.0
N.D.
N.D.
nitrogen source
D-Alanine (N)
-1.3
-1.9
-0.6
N.D.
N.D.
nitrogen source
L-Threonine (N)
-2.1
-1.2
-0.4
N.D.
N.D.
carbon source
D-Glucose (C)
-1.2
-1.2
-1.2
N.D.
N.D.
stress
Vancomycin 0.5 mg/ml
-2.5
-2.0
+1.3
N.D.
N.D.
stress
Vancomycin 0.25 mg/ml
-2.1
-1.6
+0.7
N.D.
N.D.
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