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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1820 and PfGW456L13_1821 overlap by 14 nucleotides
PfGW456L13_1821 and PfGW456L13_1822 overlap by 4 nucleotides
PfGW456L13_1822 and PfGW456L13_1823 are separated by 200 nucleotides
PfGW456L13_1823 and PfGW456L13_1824 are separated by 98 nucleotides
PfGW456L13_1820 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 2,005,717 to 2,007,261
_1820
PfGW456L13_1821 - FIG01248689: hypothetical protein, at 2,007,248 to 2,008,225
_1821
PfGW456L13_1822 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 2,008,222 to 2,008,947
_1822
PfGW456L13_1823 - Exodeoxyribonuclease I (EC 3.1.11.1), at 2,009,148 to 2,010,578
_1823
PfGW456L13_1824 - transcriptional regulator MvaT, P16 subunit, at 2,010,677 to 2,011,054
_1824
Group
Condition
PfGW456L13
_1820
PfGW456L13
_1821
PfGW456L13
_1822
PfGW456L13
_1823
PfGW456L13
_1824
carbon source
octanoate (C)
-0.4
-0.0
-1.0
-0.9
-3.2
carbon source
D-Glucose (C)
-0.2
-0.0
+0.2
-0.3
-4.0
carbon source
D-Galactose (C)
-0.1
+0.2
+0.0
-0.6
-3.4
stress
Vancomycin 0.5 mg/ml
-0.1
-0.1
+0.3
-0.8
-3.1
carbon source
Trisodium citrate (C)
-0.1
-0.3
-0.3
-0.3
-2.8
stress
Vancomycin 0.25 mg/ml
+0.0
-0.1
+0.0
-0.6
-3.0
carbon source
D-Gluconic Acid (C)
+0.0
-0.3
+0.0
-0.4
-3.0
carbon source
D-Gluconic Acid (C)
+0.1
-0.1
+0.3
-0.3
-3.4
carbon source
L-Malic (C)
+0.1
+0.2
-0.0
-0.0
-3.8
carbon source
D-Serine (C)
-0.1
-0.1
+0.2
-0.1
-3.3
carbon source
Glycerol (C)
-0.1
-0.0
-0.3
-0.2
-2.7
stress
Cisplatin 0.0125 mg/ml
-0.0
-0.1
-0.4
-0.3
-2.5
stress
Chloride 400 mM
+0.0
-0.2
-0.1
-0.3
-2.7
carbon source
a-Ketoglutaric (C)
-0.1
-0.0
-0.6
-0.5
-1.9
control
LB control
-0.0
-0.0
-0.2
-0.2
-2.6
carbon source
L-Valine (C)
-0.1
-0.0
+0.1
-0.4
-2.6
carbon source
L-Lactate (C)
-0.2
+0.1
-0.3
-0.2
-2.4
carbon source
D-Fructose (C)
-0.0
-0.1
-0.2
-0.6
-2.1
nitrogen source
nitrate (N)
+0.1
-0.1
+0.1
+0.0
-2.8
nitrogen source
NAG (N)
-0.1
-0.1
-0.5
-0.3
-1.6
carbon source
L-Asparagine (C)
-0.0
-0.1
+0.1
-0.2
-2.3
carbon source
L-Tryptophan (C)
-0.0
+0.0
+0.1
-0.1
-2.5
carbon source
D-Fructose (C)
-0.1
-0.0
-0.0
-0.8
-1.6
carbon source
L-Tryptophan (C)
-0.2
-0.1
-0.4
-0.5
-1.4
carbon source
D-Galactose (C)
-0.1
-0.1
+0.1
-0.2
-2.2
stress
nitrite 10 mM
+0.1
+0.1
-0.3
-0.1
-2.3
nitrogen source
L-Serine (N)
+0.0
-0.1
-0.3
-0.2
-1.9
control
LB control
-0.0
+0.0
+0.2
-0.2
-2.3
carbon source
L-Arabinose (C)
+0.1
-0.0
+0.3
-0.1
-2.5
nitrogen source
Ammonium chloride (N)
+0.0
-0.1
+0.2
-0.0
-2.2
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