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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1817 and PfGW456L13_1818 are separated by 897 nucleotides
PfGW456L13_1818 and PfGW456L13_1819 are separated by 171 nucleotides
PfGW456L13_1819 and PfGW456L13_1820 are separated by 32 nucleotides
PfGW456L13_1820 and PfGW456L13_1821 overlap by 14 nucleotides
PfGW456L13_1817 - MoxR-like ATPases, at 1,999,976 to 2,000,977
_1817
PfGW456L13_1818 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 2,001,875 to 2,004,385
_1818
PfGW456L13_1819 - FIG00955538: hypothetical protein, at 2,004,557 to 2,005,684
_1819
PfGW456L13_1820 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 2,005,717 to 2,007,261
_1820
PfGW456L13_1821 - FIG01248689: hypothetical protein, at 2,007,248 to 2,008,225
_1821
Group
Condition
PfGW456L13
_1817
PfGW456L13
_1818
PfGW456L13
_1819
PfGW456L13
_1820
PfGW456L13
_1821
carbon source
Trisodium citrate (C)
-0.3
-0.1
-0.7
-0.1
-0.3
carbon source
D-Galactose (C)
-0.4
+0.0
-0.6
-0.1
-0.1
nitrogen source
Gly-Glu (N)
-0.4
-0.1
-0.4
-0.0
-0.2
carbon source
L-Lactate (C)
-0.5
-0.1
-0.2
-0.2
+0.1
carbon source
a-Ketoglutaric (C)
+0.2
+0.0
-1.1
-0.1
-0.0
carbon source
L-Valine (C)
-0.1
-0.0
-0.4
-0.2
-0.1
carbon source
octanoate (C)
+0.0
+0.0
-0.3
-0.4
-0.0
carbon source
L-Malic (C)
-0.4
-0.1
-0.5
+0.1
+0.2
carbon source
D-Fructose (C)
+0.3
+0.0
-0.7
-0.1
-0.0
carbon source
L-Malic (C)
-0.4
+0.1
-0.2
+0.0
-0.1
carbon source
Glycerol (C)
+0.4
+0.0
-0.7
-0.1
-0.0
nitrogen source
L-Isoleucine (N)
+0.2
-0.0
-0.4
+0.2
-0.2
nitrogen source
L-Citrulline (N)
+0.1
-0.0
-0.5
+0.0
+0.2
carbon source
a-Ketoglutaric (C)
+0.0
+0.0
-0.5
+0.2
+0.0
carbon source
L-Arabinose (C)
-0.8
+0.1
+0.5
-0.1
+0.1
carbon source
D-Glucose (C)
+0.3
-0.1
-0.1
-0.2
-0.0
stress
Lomefloxacin 0.0004 mM
+0.3
-0.1
-0.2
+0.1
+0.1
carbon source
D-Gluconic Acid (C)
+0.2
+0.2
+0.1
+0.0
-0.3
stress
Aluminum chloride 5 mM
+0.4
-0.0
-0.3
+0.1
+0.0
carbon source
D-Lactate (C)
+0.3
+0.2
-0.4
+0.1
+0.1
carbon source
Putrescine (C)
+0.4
+0.2
-0.3
+0.1
-0.1
carbon source
L-Glutamine (C)
+0.3
+0.1
-0.2
+0.1
+0.1
nitrogen source
L-Threonine (N)
+0.3
+0.1
-0.2
+0.1
+0.1
carbon source
D-Mannose (C)
+0.4
+0.1
-0.2
+0.0
+0.1
stress
Cobalt chloride 0.16 mM
+0.2
+0.1
+0.4
-0.1
-0.0
carbon source
D-Gluconic Acid (C)
+0.4
+0.1
+0.1
+0.1
-0.1
carbon source
L-Arabinose (C)
+0.3
-0.0
+0.3
+0.1
-0.0
stress
Bacitracin 0.5 mg/ml
+0.4
+0.0
+0.3
+0.0
-0.1
stress
A22 0.04 mg/ml
+0.4
-0.1
+0.1
+0.2
+0.1
carbon source
D,L-Lactate (C)
+0.5
+0.1
+0.1
+0.1
-0.0
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