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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1793 and PfGW456L13_1794 are separated by 159 nucleotides
PfGW456L13_1794 and PfGW456L13_1795 overlap by 4 nucleotides
PfGW456L13_1795 and PfGW456L13_1796 are separated by 303 nucleotides
PfGW456L13_1796 and PfGW456L13_1797 are separated by 195 nucleotides
PfGW456L13_1793 - Glycine cleavage system transcriptional activator, at 1,973,947 to 1,974,828
_1793
PfGW456L13_1794 - Acetolactate synthase, large subunit (EC 2.2.1.6), at 1,974,988 to 1,976,625
_1794
PfGW456L13_1795 - Aldehyde dehydrogenase (EC 1.2.1.3), at 1,976,622 to 1,978,070
_1795
PfGW456L13_1796 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,978,374 to 1,979,477
_1796
PfGW456L13_1797 - ABC spermidine/putrescine transporter, inner membrane subunit, at 1,979,673 to 1,980,581
_1797
Group
Condition
PfGW456L13
_1793
PfGW456L13
_1794
PfGW456L13
_1795
PfGW456L13
_1796
PfGW456L13
_1797
carbon source
D-Galactose (C)
-0.2
+0.1
-0.6
-0.2
-0.1
carbon source
L-Malic (C)
-0.5
+0.2
-0.2
-0.4
-0.1
carbon source
Trisodium citrate (C)
-0.5
+0.1
-0.3
+0.1
-0.2
carbon source
L-Lactate (C)
-0.4
-0.4
+0.2
-0.0
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.9
-0.0
+0.6
-0.2
-0.1
nitrogen source
L-Glutamic (N)
-0.7
-0.1
+0.4
-0.1
-0.0
carbon source
D-Gluconic Acid (C)
-0.1
+0.4
-0.8
+0.3
-0.2
nitrogen source
Gly-DL-Asp (N)
-0.8
-0.1
+0.3
+0.1
+0.1
nitrogen source
Cytosine (N)
-0.4
-0.3
+0.4
+0.1
-0.1
carbon source
D-Alanine (C)
-0.5
+0.0
+0.5
-0.1
-0.0
nitrogen source
D-Serine (N)
-0.1
-0.1
+0.3
+0.1
-0.3
stress
Nickel (II) chloride 1 mM
-0.3
-0.0
+0.6
-0.1
-0.2
carbon source
D-Gluconic Acid (C)
-1.4
-0.1
+1.2
+0.2
+0.1
stress
Aluminum chloride 2.5 mM
+0.5
+0.1
-0.6
+0.0
+0.0
carbon source
Glycerol (C)
+0.4
-0.1
+0.1
+0.1
-0.4
nitrogen source
NAG (N)
-0.3
-0.2
+0.4
+0.1
+0.1
control
LB control
+0.4
-0.0
-0.3
+0.1
-0.1
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-0.2
+0.2
+0.4
carbon source
D-Fructose (C)
-0.3
+0.1
+0.7
-0.1
-0.2
carbon source
L-Arabinose (C)
+0.3
-0.2
+0.5
+0.0
-0.3
carbon source
a-Ketoglutaric (C)
-0.1
-0.2
+0.7
-0.2
+0.1
carbon source
D-Galactose (C)
+0.1
-0.1
+0.5
+0.1
-0.3
nitrogen source
Gly-Glu (N)
+0.2
-0.2
+0.4
+0.2
-0.1
carbon source
Putrescine (C)
-0.5
+0.1
+0.7
+0.1
+0.0
nitrogen source
L-Proline (N)
-0.4
+0.1
+0.7
+0.3
+0.1
carbon source
L-Tryptophan (C)
-0.2
+0.1
+0.8
+0.2
-0.1
carbon source
D-Lactate (C)
+0.5
-0.1
+0.3
+0.2
-0.1
carbon source
D-Fructose (C)
+0.1
-0.2
+0.7
+0.1
+0.1
carbon source
L-Valine (C)
+0.5
+0.0
+0.2
+0.3
+0.0
carbon source
L-Glutamine (C)
+0.3
+0.3
+0.6
+0.1
-0.1
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