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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens GW456-L13
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PfGW456L13_1566 and PfGW456L13_1567 are separated by 27 nucleotides
PfGW456L13_1567 and PfGW456L13_1568 overlap by 1 nucleotides
PfGW456L13_1568 and PfGW456L13_1569 are separated by 15 nucleotides
PfGW456L13_1569 and PfGW456L13_1570 are separated by 3 nucleotides
PfGW456L13_1566 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,729,732 to 1,730,778
_1566
PfGW456L13_1567 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 1,730,806 to 1,731,612
_1567
PfGW456L13_1568 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 1,731,612 to 1,732,532
_1568
PfGW456L13_1569 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 1,732,548 to 1,733,666
_1569
PfGW456L13_1570 - hypothetical protein, at 1,733,670 to 1,733,906
_1570
Group
Condition
PfGW456L13
_1566
PfGW456L13
_1567
PfGW456L13
_1568
PfGW456L13
_1569
PfGW456L13
_1570
carbon source
D-Fructose (C)
-0.2
+0.0
-0.1
-0.4
-0.9
carbon source
L-Lactate (C)
-0.0
+0.0
-0.1
-0.5
-0.6
stress
nitrite 10 mM
-0.1
-0.0
+0.0
-0.0
-0.9
carbon source
D-Gluconic Acid (C)
-0.1
-0.2
+0.0
-0.3
-0.4
carbon source
L-Malic (C)
+0.0
-0.6
-0.1
+0.1
-0.3
control
LB
+0.1
-0.4
-0.0
-0.1
-0.4
carbon source
Trisodium citrate (C)
+0.1
-0.3
+0.2
+0.1
-0.9
carbon source
Glycerol (C)
-0.2
-0.1
+0.1
+0.0
-0.5
nitrogen source
Gly-DL-Asp (N)
+0.2
+0.2
+0.0
-0.5
-0.5
nitrogen source
D-Alanine (N)
-0.1
+0.1
+0.1
-0.6
-0.0
carbon source
L-Malic (C)
-0.1
+0.1
+0.2
-0.3
-0.3
carbon source
L-Glutamine (C)
-0.1
-0.3
+0.1
-0.3
+0.2
carbon source
D-Glucose (C)
-0.5
+0.5
-0.2
-0.4
+0.2
carbon source
L-Arabinose (C)
-0.2
-0.0
-0.0
+0.4
-0.5
carbon source
D-Galactose (C)
-0.1
-0.2
+0.1
-0.3
+0.3
carbon source
L-Glutamine (C)
-0.2
+0.2
-0.0
+0.2
-0.5
carbon source
a-Ketoglutaric (C)
-0.7
+0.0
-0.1
+0.3
+0.2
carbon source
L-Tryptophan (C)
-0.3
-0.4
-0.1
+0.1
+0.6
carbon source
L-Alanine (C)
-0.0
-0.1
+0.0
-0.5
+0.5
carbon source
Glycerol (C)
-0.2
+0.0
-0.0
+0.5
-0.4
carbon source
a-Ketoglutaric (C)
+0.3
+0.0
-0.1
-0.8
+0.7
control
LB control
+0.1
-0.1
-0.1
-0.2
+0.5
carbon source
D-Galactose (C)
-0.2
+0.2
-0.2
-0.2
+0.6
carbon source
D-Fructose (C)
-0.1
-0.3
+0.0
+0.0
+0.8
carbon source
L-Arabinose (C)
+0.3
-0.3
+0.1
+0.2
+0.3
carbon source
D-Lactate (C)
-0.1
+0.3
-0.1
+0.2
+0.4
carbon source
D,L-Lactate (C)
+0.1
+0.2
-0.1
+0.2
+0.5
carbon source
octanoate (C)
-0.3
+0.2
-0.1
+0.1
+0.9
carbon source
D-Gluconic Acid (C)
+0.3
+0.2
+0.0
+0.2
+0.3
carbon source
Putrescine (C)
+0.0
-0.1
+0.3
+0.5
+0.4
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