Fitness for 5 genes in Pseudomonas fluorescens GW456-L13

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500 ntPfGW456L13_154 and PfGW456L13_155 are separated by 93 nucleotidesPfGW456L13_155 and PfGW456L13_156 overlap by 1 nucleotidesPfGW456L13_156 and PfGW456L13_157 overlap by 4 nucleotidesPfGW456L13_157 and PfGW456L13_158 are separated by 15 nucleotides PfGW456L13_154 - RNA-binding protein Hfq, at 178,609 to 178,869 _154 PfGW456L13_155 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 178,963 to 179,934 _155 PfGW456L13_156 - DNA mismatch repair protein MutL, at 179,934 to 181,844 _156 PfGW456L13_157 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 181,841 to 183,256 _157 PfGW456L13_158 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 183,272 to 183,742 _158
Group Condition PfGW456L13_154 PfGW456L13_155 PfGW456L13_156 PfGW456L13_157 PfGW456L13_158
carbon source D-Fructose (C) N.D. -0.1 +0.0 -3.7 N.D.
carbon source L-Histidine (C) N.D. -0.7 -0.7 -2.0 N.D.
stress nitrate 200 mM N.D. -0.4 -0.1 -2.7 N.D.
stress Chloride 400 mM N.D. -0.6 -0.1 -2.5 N.D.
carbon source D-Galactose (C) N.D. -2.1 -0.8 +0.1 N.D.
nitrogen source L-Arginine (N) N.D. -1.0 -0.3 -1.4 N.D.
carbon source D-Lactate (C) N.D. -0.9 -0.3 -1.3 N.D.
lb LB N.D. -0.4 +0.0 -1.9 N.D.
carbon source L-Histidine (C) N.D. -0.5 -0.1 -1.6 N.D.
stress Benzethonium chloride 0.0125 mM N.D. -0.3 -0.2 -1.7 N.D.
carbon source D-Mannose (C) N.D. -2.0 -0.5 +0.4 N.D.
nitrogen source L-Proline (N) N.D. -0.4 -0.0 -1.7 N.D.
carbon source L-Phenylalanine (C) N.D. -1.2 -0.3 -0.4 N.D.
carbon source L-Arabinose (C) N.D. -0.8 -0.3 -0.8 N.D.
stress sodium fluoride 12.5 mM N.D. -1.7 -0.0 -0.2 N.D.
carbon source D-Galactose (C) N.D. -2.3 -0.2 +0.6 N.D.
carbon source L-Arabinose (C) N.D. -1.3 -1.4 +0.9 N.D.
carbon source a-Ketoglutaric (C) N.D. -0.7 +0.1 -1.1 N.D.
control LB control N.D. -0.7 -0.3 -0.7 N.D.
carbon source D-Mannose (C) N.D. -1.6 -0.2 +0.1 N.D.
nitrogen source NAG (N) N.D. -1.5 +0.2 +0.1 N.D.
carbon source L-Tryptophan (C) N.D. -1.5 +0.2 +0.5 N.D.
nitrogen source L-Asparagine (N) N.D. -1.1 -0.1 +0.6 N.D.
carbon source L-Valine (C) N.D. +0.8 -0.1 -1.3 N.D.
carbon source Putrescine (C) N.D. -0.9 -0.4 +0.8 N.D.
stress Cisplatin 0.0125 mg/ml N.D. +0.7 +0.2 -1.0 N.D.
carbon source D-Gluconic Acid (C) N.D. -0.3 -0.7 +0.9 N.D.
carbon source a-Ketoglutaric (C) N.D. -0.3 -0.3 +1.4 N.D.
nitrogen source D-Serine (N) N.D. +1.0 -0.1 +1.3 N.D.
stress Lomefloxacin 0.0004 mM N.D. +3.0 +0.2 -0.1 N.D.
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